Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1280407..1280675 | Replicon | chromosome |
| Accession | NC_011750 | ||
| Organism | Escherichia coli IAI39 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1280535..1280637 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1280407..1280675 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECIAI39_RS06090 | 1276961..1277623 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ECIAI39_RS06095 | 1277647..1278303 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| ECIAI39_RS06100 | 1278405..1278635 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECIAI39_RS06105 | 1278774..1279148 | + | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| ECIAI39_RS06110 | 1279152..1280024 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| ECIAI39_RS06115 | 1280037..1280378 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1280407..1280675 | - | 269 | - | - | Antitoxin |
| - | 1280535..1280637 | + | 103 | - | - | Toxin |
| ECIAI39_RS06120 | 1280772..1281428 | + | 657 | WP_000814509.1 | protein-serine/threonine phosphatase | - |
| ECIAI39_RS06125 | 1281429..1281620 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ECIAI39_RS06130 | 1281725..1281961 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECIAI39_RS06135 | 1282079..1283518 | - | 1440 | WP_012602287.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T23418 NC_011750:1280535-1280637 [Escherichia coli IAI39]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT23418 NC_011750:c1280675-1280407 [Escherichia coli IAI39]
AAAGTCAGCGAAGGGAATGATTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGATTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
