Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2074249..2074520 | Replicon | chromosome |
| Accession | NC_011748 | ||
| Organism | Escherichia coli 55989 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2074287..2074390 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2074249..2074520 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC55989_RS10380 | 2071406..2072845 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EC55989_RS10385 | 2072963..2073199 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EC55989_RS10390 | 2073304..2073495 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EC55989_RS10395 | 2073496..2074152 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2074249..2074520 | + | 272 | - | - | Antitoxin |
| - | 2074287..2074390 | - | 104 | - | - | Toxin |
| EC55989_RS10405 | 2074548..2074889 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EC55989_RS10410 | 2074902..2075774 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EC55989_RS10415 | 2075778..2076152 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EC55989_RS10420 | 2076291..2076521 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EC55989_RS10425 | 2076623..2077279 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EC55989_RS10430 | 2077303..2077965 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T23394 NC_011748:c2074390-2074287 [Escherichia coli 55989]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT23394 NC_011748:2074249-2074520 [Escherichia coli 55989]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
