Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3021682..3021827 | Replicon | chromosome |
| Accession | NZ_CP091594 | ||
| Organism | Klebsiella pneumoniae strain Nord5-1_R48 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3021718..3021820 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3021682..3021827 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L5467_RS17700 | 3016812..3018872 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| L5467_RS17705 | 3018876..3019535 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| L5467_RS17710 | 3019614..3019844 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L5467_RS17715 | 3019957..3020331 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| L5467_RS17720 | 3020335..3021204 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| L5467_RS17725 | 3021221..3021559 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 3021682..3021827 | - | 146 | - | - | Antitoxin |
| - | 3021718..3021820 | + | 103 | - | - | Toxin |
| L5467_RS17730 | 3022196..3022339 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| L5467_RS17735 | 3022444..3023412 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| L5467_RS17740 | 3023569..3024222 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| L5467_RS17745 | 3024219..3024410 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L5467_RS17750 | 3024508..3024747 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L5467_RS17755 | 3024863..3026296 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T233925 NZ_CP091594:3021718-3021820 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT233925 NZ_CP091594:c3021827-3021682 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
