Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3760313..3760458 | Replicon | chromosome |
| Accession | NZ_CP091582 | ||
| Organism | Klebsiella pneumoniae strain Nord9_R85 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3760349..3760451 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3760313..3760458 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L5468_RS18430 (L5468_18430) | 3755442..3757502 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| L5468_RS18435 (L5468_18435) | 3757506..3758165 | - | 660 | WP_234283381.1 | exodeoxyribonuclease X | - |
| L5468_RS18440 (L5468_18440) | 3758244..3758474 | - | 231 | WP_064181481.1 | DNA polymerase III subunit theta | - |
| L5468_RS18445 (L5468_18445) | 3758587..3758961 | + | 375 | WP_237437219.1 | CopC domain-containing protein YobA | - |
| L5468_RS18450 (L5468_18450) | 3758965..3759834 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| L5468_RS18455 (L5468_18455) | 3759851..3760189 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 3760313..3760458 | - | 146 | - | - | Antitoxin |
| - | 3760349..3760451 | + | 103 | - | - | Toxin |
| L5468_RS18460 (L5468_18460) | 3760826..3760969 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| L5468_RS18465 (L5468_18465) | 3761074..3762042 | - | 969 | WP_184856114.1 | VirK/YbjX family protein | - |
| L5468_RS18470 (L5468_18470) | 3762199..3762852 | + | 654 | WP_237437220.1 | protein-serine/threonine phosphatase | - |
| L5468_RS18475 (L5468_18475) | 3762849..3763040 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L5468_RS18480 (L5468_18480) | 3763138..3763377 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L5468_RS18485 (L5468_18485) | 3763493..3764926 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T233902 NZ_CP091582:3760349-3760451 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT233902 NZ_CP091582:c3760458-3760313 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
