Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1878189..1878457 | Replicon | chromosome |
| Accession | NC_011742 | ||
| Organism | Escherichia coli S88 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1878227..1878329 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1878189..1878457 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECS88_RS10765 | 1875346..1876785 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECS88_RS10770 | 1876903..1877139 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECS88_RS10775 | 1877244..1877435 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECS88_RS10780 | 1877436..1878092 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 1878189..1878457 | + | 269 | - | - | Antitoxin |
| - | 1878227..1878329 | - | 103 | - | - | Toxin |
| ECS88_RS10785 | 1878487..1878828 | - | 342 | WP_000984819.1 | YebY family protein | - |
| ECS88_RS10790 | 1878841..1879713 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| ECS88_RS10795 | 1879717..1880091 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECS88_RS10800 | 1880230..1880460 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECS88_RS10805 | 1880562..1881218 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| ECS88_RS10810 | 1881241..1881903 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T23360 NC_011742:c1878329-1878227 [Escherichia coli S88]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT23360 NC_011742:1878189-1878457 [Escherichia coli S88]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
