Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 637712..637913 | Replicon | chromosome |
| Accession | NZ_CP091496 | ||
| Organism | Enterobacter cloacae complex sp. ECL404 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 637805..637908 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 637712..637913 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3071_RS02955 (L3071_02955) | 634261..634923 | - | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
| L3071_RS02960 (L3071_02960) | 634948..635586 | - | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| L3071_RS02965 (L3071_02965) | 635698..635928 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| L3071_RS02970 (L3071_02970) | 636066..636437 | + | 372 | WP_038416261.1 | CopC domain-containing protein YobA | - |
| L3071_RS02975 (L3071_02975) | 636439..637308 | + | 870 | WP_038416260.1 | copper homeostasis membrane protein CopD | - |
| L3071_RS02980 (L3071_02980) | 637325..637663 | + | 339 | WP_022648464.1 | YebY family protein | - |
| - | 637712..637913 | - | 202 | - | - | Antitoxin |
| L3071_RS02985 (L3071_02985) | 637789..637986 | - | 198 | WP_071881497.1 | hypothetical protein | - |
| - | 637805..637908 | + | 104 | - | - | Toxin |
| L3071_RS02990 (L3071_02990) | 638032..639012 | - | 981 | WP_038416259.1 | VirK/YbjX family protein | - |
| L3071_RS02995 (L3071_02995) | 639180..639824 | + | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| L3071_RS03000 (L3071_03000) | 639859..640098 | - | 240 | WP_006811010.1 | YebV family protein | - |
| L3071_RS03005 (L3071_03005) | 640203..641651 | - | 1449 | WP_202195747.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 565773..654564 | 88791 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T233435 NZ_CP091496:637805-637908 [Enterobacter cloacae complex sp. ECL404]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT233435 NZ_CP091496:c637913-637712 [Enterobacter cloacae complex sp. ECL404]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
