Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 4035833..4036586 | Replicon | chromosome |
| Accession | NZ_CP091492 | ||
| Organism | Enterobacter cloacae complex sp. ECL405 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | R8WN26 |
| Locus tag | L3070_RS19315 | Protein ID | WP_016154457.1 |
| Coordinates | 4036209..4036586 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | L3070_RS19310 | Protein ID | WP_162838704.1 |
| Coordinates | 4035833..4036159 (+) | Length | 109 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3070_RS19250 (L3070_19250) | 4030891..4031157 | + | 267 | WP_009652486.1 | hypothetical protein | - |
| L3070_RS19255 (L3070_19255) | 4031170..4031481 | + | 312 | WP_009652410.1 | hypothetical protein | - |
| L3070_RS19260 (L3070_19260) | 4031528..4031998 | + | 471 | WP_009652431.1 | hypothetical protein | - |
| L3070_RS19265 (L3070_19265) | 4032047..4032559 | + | 513 | WP_009652395.1 | DUF4234 domain-containing protein | - |
| L3070_RS19270 (L3070_19270) | 4032642..4032863 | + | 222 | WP_009652443.1 | hypothetical protein | - |
| L3070_RS19275 (L3070_19275) | 4032919..4033152 | + | 234 | WP_009652474.1 | DUF905 domain-containing protein | - |
| L3070_RS19280 (L3070_19280) | 4033256..4034074 | + | 819 | WP_009652424.1 | DUF932 domain-containing protein | - |
| L3070_RS19285 (L3070_19285) | 4034074..4034328 | + | 255 | WP_009652519.1 | hypothetical protein | - |
| L3070_RS19290 (L3070_19290) | 4034345..4034818 | + | 474 | WP_009652453.1 | antirestriction protein | - |
| L3070_RS19295 (L3070_19295) | 4034829..4035047 | + | 219 | WP_009652503.1 | hypothetical protein | - |
| L3070_RS19300 (L3070_19300) | 4035059..4035541 | + | 483 | WP_016154455.1 | DNA repair protein RadC | - |
| L3070_RS19305 (L3070_19305) | 4035555..4035776 | + | 222 | WP_009652392.1 | DUF987 domain-containing protein | - |
| L3070_RS19310 (L3070_19310) | 4035833..4036159 | + | 327 | WP_162838704.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| L3070_RS19315 (L3070_19315) | 4036209..4036586 | + | 378 | WP_016154457.1 | TA system toxin CbtA family protein | Toxin |
| L3070_RS19320 (L3070_19320) | 4036583..4037074 | + | 492 | WP_009652438.1 | DUF5983 family protein | - |
| L3070_RS19325 (L3070_19325) | 4037104..4037307 | + | 204 | WP_009652505.1 | DUF957 domain-containing protein | - |
| L3070_RS19330 (L3070_19330) | 4037388..4038233 | + | 846 | Protein_3776 | DUF4942 domain-containing protein | - |
| L3070_RS19335 (L3070_19335) | 4038245..4038481 | + | 237 | WP_016154458.1 | hypothetical protein | - |
| L3070_RS19340 (L3070_19340) | 4038614..4039036 | - | 423 | WP_232926345.1 | hypothetical protein | - |
| L3070_RS19345 (L3070_19345) | 4039648..4040175 | - | 528 | WP_045403948.1 | helix-turn-helix domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14168.19 Da Isoelectric Point: 9.5224
>T233428 WP_016154457.1 NZ_CP091492:4036209-4036586 [Enterobacter cloacae complex sp. ECL405]
MQTQPVPPKREVSPRPSPVAIWQRLLSHLLDRHYGLTLNDTPFGKDGVIQEHIDAGISLCDAVNFIVEKYDLVRTDRRGF
NAETQSPLLTSIDILRARKATGLMTRHSYRAVTDITTGKYREVQP
MQTQPVPPKREVSPRPSPVAIWQRLLSHLLDRHYGLTLNDTPFGKDGVIQEHIDAGISLCDAVNFIVEKYDLVRTDRRGF
NAETQSPLLTSIDILRARKATGLMTRHSYRAVTDITTGKYREVQP
Download Length: 378 bp
>T233428 NZ_HG938354:c672570-672184 [Neorhizobium galegae bv. orientalis str. HAMBI 540]
ATGATCGTCGACACTTCGGCGCTGGTCGCAATTCTTTATCGTGAGCCCGAGGCGGCGAGGTTTGTTAAGGCCATCCATGA
GGTCGAGCTCACGCGGATCAGCGTAGCGAACTACGTGGAGTTATCGATGGTGGTGGAAGGCCAGCTCGGCCTTGATGGTA
TGCGCCAGGCCGAGGCTTTCCTCCGGCGCGCCGGCATCATCGTCGAGCCTGTCACTCTTGATCACGGCGAACTGGCCCGA
CAGGCTTTTCTGGATTTCGGTAAAGGCCGTCACAAGGCCGGTCTCAACTTCGGCGACTGCTTTGCTTATGCTCTGGCGAA
AGCGACTGGCGAACCGCTGCTGTTTAAGGGTAACGACTTCTCTCAAACCGATGTCCAGGCGGCGTAA
ATGATCGTCGACACTTCGGCGCTGGTCGCAATTCTTTATCGTGAGCCCGAGGCGGCGAGGTTTGTTAAGGCCATCCATGA
GGTCGAGCTCACGCGGATCAGCGTAGCGAACTACGTGGAGTTATCGATGGTGGTGGAAGGCCAGCTCGGCCTTGATGGTA
TGCGCCAGGCCGAGGCTTTCCTCCGGCGCGCCGGCATCATCGTCGAGCCTGTCACTCTTGATCACGGCGAACTGGCCCGA
CAGGCTTTTCTGGATTTCGGTAAAGGCCGTCACAAGGCCGGTCTCAACTTCGGCGACTGCTTTGCTTATGCTCTGGCGAA
AGCGACTGGCGAACCGCTGCTGTTTAAGGGTAACGACTTCTCTCAAACCGATGTCCAGGCGGCGTAA
Antitoxin
Download Length: 109 a.a. Molecular weight: 12079.85 Da Isoelectric Point: 6.6283
>AT233428 WP_162838704.1 NZ_CP091492:4035833-4036159 [Enterobacter cloacae complex sp. ECL405]
IAAPWWGLKRDITPCFGARLVQEGNRLHYLNDRASITGTFSDADLRHLDQAFPLLLKQLELMLLSGELNPRHQHCVTLYA
KGLICEADSLGSHGYVYLAIYPTPATTE
IAAPWWGLKRDITPCFGARLVQEGNRLHYLNDRASITGTFSDADLRHLDQAFPLLLKQLELMLLSGELNPRHQHCVTLYA
KGLICEADSLGSHGYVYLAIYPTPATTE
Download Length: 327 bp
>AT233428 NZ_HG938354:c672815-672567 [Neorhizobium galegae bv. orientalis str. HAMBI 540]
ATGAGCCTCAGCATCAAGGATCCGGAAGCCCATCGCCTGGCACAGGCGATCTCCCACGCCACGGGAGAAAGCATGACCCG
TGTCGTCACCGAGGCGTTGCGTGAGCGTTTTGCCAAGATCGAACGCCGAAAAGGCCGGGCCAGCGTCGAGGAGCTTCTCG
CGATCGCAGATCGCGCTGCAGCGAACGTCAAACGCCCCTATGTCGATCATGCCGATTTCCTTTATGACGAGAACGGCCTG
CCAAAATGA
ATGAGCCTCAGCATCAAGGATCCGGAAGCCCATCGCCTGGCACAGGCGATCTCCCACGCCACGGGAGAAAGCATGACCCG
TGTCGTCACCGAGGCGTTGCGTGAGCGTTTTGCCAAGATCGAACGCCGAAAAGGCCGGGCCAGCGTCGAGGAGCTTCTCG
CGATCGCAGATCGCGCTGCAGCGAACGTCAAACGCCCCTATGTCGATCATGCCGATTTCCTTTATGACGAGAACGGCCTG
CCAAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|