Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 3605267..3605945 | Replicon | chromosome |
| Accession | NZ_CP091492 | ||
| Organism | Enterobacter cloacae complex sp. ECL405 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | L3070_RS17255 | Protein ID | WP_080781780.1 |
| Coordinates | 3605622..3605945 (+) | Length | 108 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | L3070_RS17250 | Protein ID | WP_080781779.1 |
| Coordinates | 3605267..3605590 (+) | Length | 108 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3070_RS17225 (L3070_17225) | 3600380..3602197 | - | 1818 | WP_236904317.1 | hypothetical protein | - |
| L3070_RS17230 (L3070_17230) | 3602437..3603348 | - | 912 | WP_080781776.1 | restriction endonuclease | - |
| L3070_RS17235 (L3070_17235) | 3603694..3604512 | + | 819 | WP_080781777.1 | DUF932 domain-containing protein | - |
| L3070_RS17240 (L3070_17240) | 3604545..3605015 | + | 471 | WP_032642914.1 | DNA repair protein RadC | - |
| L3070_RS17245 (L3070_17245) | 3605024..3605245 | + | 222 | WP_080781778.1 | DUF987 domain-containing protein | - |
| L3070_RS17250 (L3070_17250) | 3605267..3605590 | + | 324 | WP_080781779.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| L3070_RS17255 (L3070_17255) | 3605622..3605945 | + | 324 | WP_080781780.1 | TA system toxin CbtA family protein | Toxin |
| L3070_RS17260 (L3070_17260) | 3606662..3607018 | + | 357 | WP_029740047.1 | hypothetical protein | - |
| L3070_RS17265 (L3070_17265) | 3607193..3607750 | + | 558 | WP_033146331.1 | YceI family protein | - |
| L3070_RS17270 (L3070_17270) | 3607742..3608533 | - | 792 | WP_112778434.1 | hypothetical protein | - |
| L3070_RS17275 (L3070_17275) | 3608530..3609060 | - | 531 | WP_112778433.1 | sigma-70 family RNA polymerase sigma factor | - |
| L3070_RS17280 (L3070_17280) | 3609068..3609595 | - | 528 | WP_112778432.1 | tetratricopeptide repeat protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 3574665..3605945 | 31280 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 108 a.a. Molecular weight: 12047.85 Da Isoelectric Point: 6.4783
>T233425 WP_080781780.1 NZ_CP091492:3605622-3605945 [Enterobacter cloacae complex sp. ECL405]
MQISSVPATVPVSSRLSPVMVWQQLLTYLLEHHYGLTLNDTPFHDDTAIQGHIEAGITLADAVNFLVEKYELVRIDRKGF
SWQEQTPFITATDILRAKKSIGLLPRS
MQISSVPATVPVSSRLSPVMVWQQLLTYLLEHHYGLTLNDTPFHDDTAIQGHIEAGITLADAVNFLVEKYELVRIDRKGF
SWQEQTPFITATDILRAKKSIGLLPRS
Download Length: 324 bp
>T233425 NZ_HG938354:c105364-104849 [Neorhizobium galegae bv. orientalis str. HAMBI 540]
ATGCCTGAATTGGCCCCGGAATCGGGCATCCTCTGGCGTGCCTATGTGCCGCGCTGGGCGCACGCGCCGCTTTCCGGCGA
CGGCGCTGCTCGCTTCGGCGGACGCTGGAACCCGGTCGGCGCAGCGACCATCTATGCGGCACGCGAGCTTTGCACCGCCT
GGGCGGAGTATAATCAGGGTTTCGTCCAGCATCCGGCCCTGATCGCGCAGCTTCGGCTCGACGGCGCGCGGCTCGCGGAT
CTGACCAGCCCCCAGGTTCTGGCCGGTCTTGGCGTCGACGAGACAATCCACCACTGCGAATGGCGGGCCGATCTCGATGC
CGGCCAGATACCGGCGACGCATCTCGTTGCAGAGAGGTTGCTCGATGATGGCTGCGACGGCGTTATCTATCCGTCCTTCA
TGTCGCCAGGCGGAACCTGCGTCGCCCTCTGGCGCTGGAACGGCAAGGATCAGCTGAAGCTCACGGTCACCGACCCCGAC
GGCCGGCTGCCGAAAAGCCCGGCTTCCTGGTTATAG
ATGCCTGAATTGGCCCCGGAATCGGGCATCCTCTGGCGTGCCTATGTGCCGCGCTGGGCGCACGCGCCGCTTTCCGGCGA
CGGCGCTGCTCGCTTCGGCGGACGCTGGAACCCGGTCGGCGCAGCGACCATCTATGCGGCACGCGAGCTTTGCACCGCCT
GGGCGGAGTATAATCAGGGTTTCGTCCAGCATCCGGCCCTGATCGCGCAGCTTCGGCTCGACGGCGCGCGGCTCGCGGAT
CTGACCAGCCCCCAGGTTCTGGCCGGTCTTGGCGTCGACGAGACAATCCACCACTGCGAATGGCGGGCCGATCTCGATGC
CGGCCAGATACCGGCGACGCATCTCGTTGCAGAGAGGTTGCTCGATGATGGCTGCGACGGCGTTATCTATCCGTCCTTCA
TGTCGCCAGGCGGAACCTGCGTCGCCCTCTGGCGCTGGAACGGCAAGGATCAGCTGAAGCTCACGGTCACCGACCCCGAC
GGCCGGCTGCCGAAAAGCCCGGCTTCCTGGTTATAG
Antitoxin
Download Length: 108 a.a. Molecular weight: 12029.77 Da Isoelectric Point: 6.3116
>AT233425 WP_080781779.1 NZ_CP091492:3605267-3605590 [Enterobacter cloacae complex sp. ECL405]
MQNSWGLKRDISPCFGARLVQEGCRLHFLADRAGISGTFNEEEALCLDQAFPLVMKQLELMLTTGELNPRHQHCVTLYHN
GLTCEADTLGSHGYVYIVIYPQAFATR
MQNSWGLKRDISPCFGARLVQEGCRLHFLADRAGISGTFNEEEALCLDQAFPLVMKQLELMLTTGELNPRHQHCVTLYHN
GLTCEADTLGSHGYVYIVIYPQAFATR
Download Length: 324 bp
>AT233425 NZ_HG938354:c105725-105357 [Neorhizobium galegae bv. orientalis str. HAMBI 540]
ATGGCTCATGCTTTTGAAATCGGCGCCGCCGCTTTCCGTGAATCGCAATCCGCGCTTTTATCGGCGCGGCGGGTGTCCGA
TCTGCTCGGACTGACCCAGGCGGAACTCGCAAAACTGATCGGTGTCGCCCGCAATACGCTGACGGCCAAGAGCGGCGCCC
GCAAGGTGGATCTGGCGCTCTCCCCGGTCGTGCGCATTCTGGCCATGGCGAGCGAGATGGCCGGCGACGAGAACCGCGCG
GCGATCTGGTTCAAGCACCAGCCTATCCCGGGCTGGGCGGGCAAGACGGCTTACGACCTCGTCGGCGAAGGCAAGGCCGA
CAAGGTACTCGCCTACCTGGAGGCGGTACGCTCCGGCGTTTATGCCTGA
ATGGCTCATGCTTTTGAAATCGGCGCCGCCGCTTTCCGTGAATCGCAATCCGCGCTTTTATCGGCGCGGCGGGTGTCCGA
TCTGCTCGGACTGACCCAGGCGGAACTCGCAAAACTGATCGGTGTCGCCCGCAATACGCTGACGGCCAAGAGCGGCGCCC
GCAAGGTGGATCTGGCGCTCTCCCCGGTCGTGCGCATTCTGGCCATGGCGAGCGAGATGGCCGGCGACGAGAACCGCGCG
GCGATCTGGTTCAAGCACCAGCCTATCCCGGGCTGGGCGGGCAAGACGGCTTACGACCTCGTCGGCGAAGGCAAGGCCGA
CAAGGTACTCGCCTACCTGGAGGCGGTACGCTCCGGCGTTTATGCCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|