Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2863009..2863153 | Replicon | chromosome |
| Accession | NZ_CP091492 | ||
| Organism | Enterobacter cloacae complex sp. ECL405 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2863015..2863118 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2863009..2863153 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3070_RS13795 (L3070_13795) | 2858166..2859614 | + | 1449 | WP_205742266.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L3070_RS13800 (L3070_13800) | 2859721..2859960 | + | 240 | WP_008500472.1 | YebV family protein | - |
| L3070_RS13805 (L3070_13805) | 2859995..2860639 | - | 645 | WP_094935589.1 | protein-serine/threonine phosphatase | - |
| L3070_RS13810 (L3070_13810) | 2860806..2861747 | + | 942 | WP_094935590.1 | VirK/YbjX family protein | - |
| L3070_RS13815 (L3070_13815) | 2861921..2862817 | + | 897 | WP_094935591.1 | benzoate transporter | - |
| - | 2863009..2863153 | + | 145 | - | - | Antitoxin |
| - | 2863015..2863118 | - | 104 | - | - | Toxin |
| L3070_RS13820 (L3070_13820) | 2863257..2863595 | - | 339 | WP_033145840.1 | YebY family protein | - |
| L3070_RS13825 (L3070_13825) | 2863612..2864481 | - | 870 | WP_094935592.1 | copper homeostasis membrane protein CopD | - |
| L3070_RS13830 (L3070_13830) | 2864483..2864854 | - | 372 | WP_094935593.1 | CopC domain-containing protein YobA | - |
| L3070_RS13835 (L3070_13835) | 2864991..2865221 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| L3070_RS13840 (L3070_13840) | 2865332..2865982 | + | 651 | WP_033145843.1 | carbon-nitrogen hydrolase family protein | - |
| L3070_RS13845 (L3070_13845) | 2866007..2866669 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T233416 NZ_CP091492:c2863118-2863015 [Enterobacter cloacae complex sp. ECL405]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT233416 NZ_CP091492:2863009-2863153 [Enterobacter cloacae complex sp. ECL405]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
