Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 269715..270241 | Replicon | plasmid unnamed1 |
| Accession | NZ_CP091487 | ||
| Organism | Enterobacter cloacae complex sp. ECL411 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | L3069_RS24280 | Protein ID | WP_000323025.1 |
| Coordinates | 269954..270241 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | L3069_RS24275 | Protein ID | WP_000534858.1 |
| Coordinates | 269715..269954 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3069_RS24255 (L3069_24255) | 266043..267281 | + | 1239 | WP_000219087.1 | IS110-like element ISEsa2 family transposase | - |
| L3069_RS24260 (L3069_24260) | 267757..268329 | + | 573 | WP_001515348.1 | cytochrome b/b6 domain-containing protein | - |
| L3069_RS24265 (L3069_24265) | 268529..269452 | + | 924 | WP_000167917.1 | cation diffusion facilitator family transporter | - |
| L3069_RS24270 (L3069_24270) | 269586..269690 | - | 105 | Protein_300 | hypothetical protein | - |
| L3069_RS24275 (L3069_24275) | 269715..269954 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| L3069_RS24280 (L3069_24280) | 269954..270241 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| L3069_RS24285 (L3069_24285) | 270313..270471 | + | 159 | WP_001447866.1 | type I toxin-antitoxin system Hok family toxin | - |
| L3069_RS24290 (L3069_24290) | 271080..271400 | - | 321 | WP_000332796.1 | hypothetical protein | - |
| L3069_RS24295 (L3069_24295) | 271682..271885 | - | 204 | WP_001015183.1 | hypothetical protein | - |
| L3069_RS24300 (L3069_24300) | 271932..272282 | - | 351 | WP_000743059.1 | hypothetical protein | - |
| L3069_RS24305 (L3069_24305) | 272342..272944 | - | 603 | WP_012695474.1 | hypothetical protein | - |
| L3069_RS24310 (L3069_24310) | 273040..273984 | - | 945 | WP_000778029.1 | DUF5417 domain-containing protein | - |
| L3069_RS24315 (L3069_24315) | 274495..274671 | + | 177 | WP_001371930.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | aph(3')-Ia / mcr-9 / aph(6)-Id / aph(3'')-Ib / dfrA19 / blaTEM-1B / aac(6')-IIc / ere(A) / qacE / sul1 / qnrB4 / blaDHA-1 / catA2 / tet(D) | - | 1..316592 | 316592 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T233408 WP_000323025.1 NZ_CP091487:269954-270241 [Enterobacter cloacae complex sp. ECL411]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T233408 NZ_HG916826:c2437567-2437274 [Pseudomonas pseudoalcaligenes CECT 5344]
GTGCCACGATTGATTGTTACTGAAGGCGCGGCGAAGGGCTTGGAGCGTTGCCGGCGATTCCTCTCAGACAAAGATCCGCA
GGTCGCGCGCCGTGTTGCACAGGCAATCGAGCGCCAATTCGCTCGATTGGAGGAAAGTCCGGAAGTAGGGCGTCCATTTC
CAGATCTGCCGGAGCTGCGTGAGCTCATCATCGAATTTGGTGACTCAGGTTACGTAGCGTTGTACCGCTATGAGCGTGCA
GATGACACCGCCTATGTCTTGGCCTTTCGCCATCAAAAAGAAGCTGGCTACTGA
GTGCCACGATTGATTGTTACTGAAGGCGCGGCGAAGGGCTTGGAGCGTTGCCGGCGATTCCTCTCAGACAAAGATCCGCA
GGTCGCGCGCCGTGTTGCACAGGCAATCGAGCGCCAATTCGCTCGATTGGAGGAAAGTCCGGAAGTAGGGCGTCCATTTC
CAGATCTGCCGGAGCTGCGTGAGCTCATCATCGAATTTGGTGACTCAGGTTACGTAGCGTTGTACCGCTATGAGCGTGCA
GATGACACCGCCTATGTCTTGGCCTTTCGCCATCAAAAAGAAGCTGGCTACTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT233408 WP_000534858.1 NZ_CP091487:269715-269954 [Enterobacter cloacae complex sp. ECL411]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT233408 NZ_HG916826:c2437827-2437555 [Pseudomonas pseudoalcaligenes CECT 5344]
ATGGCCACTTCCATCAAAATTGATGACAAGCTAAAAGGCCGCATTCTGCAGTTGGCGAGCCAACGCCAGCGCTCGTCTCA
CTGGATCATGCGCGAGGCAATCACCCAGTACGTCGAGCGTGAGGAGGCCCGTGAGAGCTTCAAGCAGGAAGCCCTGGCAT
CGTGGGCGGCATATCAGGAAACCGGACGGCATTTGACCAGCCAAGAAACTCGGGCCTGGCTCGGTAGCTGGGGAACAGAT
ACTGAGGTAGAGCTTCCCAAGTGCCACGATTGA
ATGGCCACTTCCATCAAAATTGATGACAAGCTAAAAGGCCGCATTCTGCAGTTGGCGAGCCAACGCCAGCGCTCGTCTCA
CTGGATCATGCGCGAGGCAATCACCCAGTACGTCGAGCGTGAGGAGGCCCGTGAGAGCTTCAAGCAGGAAGCCCTGGCAT
CGTGGGCGGCATATCAGGAAACCGGACGGCATTTGACCAGCCAAGAAACTCGGGCCTGGCTCGGTAGCTGGGGAACAGAT
ACTGAGGTAGAGCTTCCCAAGTGCCACGATTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|