Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2748773..2748974 | Replicon | chromosome |
| Accession | NZ_CP091486 | ||
| Organism | Enterobacter cloacae complex sp. ECL411 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2748778..2748881 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2748773..2748974 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3069_RS13070 (L3069_13070) | 2745035..2746483 | + | 1449 | WP_202195747.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L3069_RS13075 (L3069_13075) | 2746588..2746827 | + | 240 | WP_006811010.1 | YebV family protein | - |
| L3069_RS13080 (L3069_13080) | 2746862..2747506 | - | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| L3069_RS13085 (L3069_13085) | 2747674..2748654 | + | 981 | WP_038416259.1 | VirK/YbjX family protein | - |
| L3069_RS13090 (L3069_13090) | 2748700..2748897 | + | 198 | WP_071881497.1 | hypothetical protein | - |
| - | 2748773..2748974 | + | 202 | - | - | Antitoxin |
| - | 2748778..2748881 | - | 104 | - | - | Toxin |
| L3069_RS13095 (L3069_13095) | 2749023..2749361 | - | 339 | WP_022648464.1 | YebY family protein | - |
| L3069_RS13100 (L3069_13100) | 2749378..2750247 | - | 870 | WP_038416260.1 | copper homeostasis membrane protein CopD | - |
| L3069_RS13105 (L3069_13105) | 2750249..2750620 | - | 372 | WP_038416261.1 | CopC domain-containing protein YobA | - |
| L3069_RS13110 (L3069_13110) | 2750758..2750988 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| L3069_RS13115 (L3069_13115) | 2751100..2751738 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| L3069_RS13120 (L3069_13120) | 2751763..2752425 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T233397 NZ_CP091486:c2748881-2748778 [Enterobacter cloacae complex sp. ECL411]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT233397 NZ_CP091486:2748773-2748974 [Enterobacter cloacae complex sp. ECL411]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
