Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 236377..236903 | Replicon | plasmid unnamed1 |
| Accession | NZ_CP091482 | ||
| Organism | Enterobacter cloacae complex sp. ECL414 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | L3068_RS24515 | Protein ID | WP_000323025.1 |
| Coordinates | 236377..236664 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | L3068_RS24520 | Protein ID | WP_000534858.1 |
| Coordinates | 236664..236903 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3068_RS24480 (L3068_24480) | 231947..232123 | - | 177 | WP_001371930.1 | hypothetical protein | - |
| L3068_RS24485 (L3068_24485) | 232634..233578 | + | 945 | WP_000778029.1 | DUF5417 domain-containing protein | - |
| L3068_RS24490 (L3068_24490) | 233674..234276 | + | 603 | WP_001371889.1 | hypothetical protein | - |
| L3068_RS24495 (L3068_24495) | 234336..234686 | + | 351 | WP_000743059.1 | hypothetical protein | - |
| L3068_RS24500 (L3068_24500) | 234733..234936 | + | 204 | WP_001015183.1 | hypothetical protein | - |
| L3068_RS24505 (L3068_24505) | 235218..235538 | + | 321 | WP_000332796.1 | hypothetical protein | - |
| L3068_RS24510 (L3068_24510) | 236151..236276 | - | 126 | WP_229020258.1 | DUF5431 family protein | - |
| L3068_RS24515 (L3068_24515) | 236377..236664 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| L3068_RS24520 (L3068_24520) | 236664..236903 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| L3068_RS24525 (L3068_24525) | 236928..237032 | + | 105 | Protein_245 | protein YdfV | - |
| L3068_RS24530 (L3068_24530) | 237166..238089 | - | 924 | WP_000167917.1 | cation diffusion facilitator family transporter | - |
| L3068_RS24535 (L3068_24535) | 238289..238861 | - | 573 | WP_001515348.1 | cytochrome b/b6 domain-containing protein | - |
| L3068_RS24540 (L3068_24540) | 239337..240575 | - | 1239 | WP_000219087.1 | IS110-like element ISEsa2 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | ant(2'')-Ia / aadA2 / qacE / sul1 / qnrA1 / blaSHV-12 / tet(A) / dfrA16 / blaCTX-M-9 / mcr-9 | - | 1..294412 | 294412 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T233394 WP_000323025.1 NZ_CP091482:c236664-236377 [Enterobacter cloacae complex sp. ECL414]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T233394 NZ_HG916765:c1019008-1018826 [Castellaniella defragrans 65Phen]
ATGAACAGCACAGACCTTATCAAGCAACTGAAGGCCGACGGCTGGTATCTGGTGCATACCGTTGGGTCGCATCACCAGTT
CAAGCATCCGACCAAGCCCGGCAAGGTCACGGTGCCCCACCCTAAGAAGGAACTGCCCCTACCGACACAACGCAGCATCC
TCAAACAGGCCGGTCTCCGATAA
ATGAACAGCACAGACCTTATCAAGCAACTGAAGGCCGACGGCTGGTATCTGGTGCATACCGTTGGGTCGCATCACCAGTT
CAAGCATCCGACCAAGCCCGGCAAGGTCACGGTGCCCCACCCTAAGAAGGAACTGCCCCTACCGACACAACGCAGCATCC
TCAAACAGGCCGGTCTCCGATAA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT233394 WP_000534858.1 NZ_CP091482:c236903-236664 [Enterobacter cloacae complex sp. ECL414]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT233394 NZ_HG916765:c1018801-1018412 [Castellaniella defragrans 65Phen]
ATGCTCTATCCGATCCACGTGCACAAGGACCGCGACAGTGCCTACGGCGCGTCCTTCCCCGACTTCCCCGGCTGCTTTGC
CGGCGCCGACGAATTGCAGGATCTGCCCCGCGCCGCCCAGGAAGCCGTCGAGGCGCACTTCCATGGCGAAACCGAAGCGA
TCCCCGGGCCCAGCGCACCCGAAGCCTGGAAAGGTCACGAGGACTTCGAGGGCGGCTTTTGGATGATGGTGGATATCGAC
CTGTCCAAGGTCAACACCAAGGCCGTTCGCCTGAACATCAGCCTGCCGGAAAACCTGGTGCATCGCATCGATGCCATGGC
CAAGGCCCAGCACTTATCGCGCTCCGCCTTCCTGGCAAAAGCAGCCGAGCGAGAAATGGCGGAAACTTGA
ATGCTCTATCCGATCCACGTGCACAAGGACCGCGACAGTGCCTACGGCGCGTCCTTCCCCGACTTCCCCGGCTGCTTTGC
CGGCGCCGACGAATTGCAGGATCTGCCCCGCGCCGCCCAGGAAGCCGTCGAGGCGCACTTCCATGGCGAAACCGAAGCGA
TCCCCGGGCCCAGCGCACCCGAAGCCTGGAAAGGTCACGAGGACTTCGAGGGCGGCTTTTGGATGATGGTGGATATCGAC
CTGTCCAAGGTCAACACCAAGGCCGTTCGCCTGAACATCAGCCTGCCGGAAAACCTGGTGCATCGCATCGATGCCATGGC
CAAGGCCCAGCACTTATCGCGCTCCGCCTTCCTGGCAAAAGCAGCCGAGCGAGAAATGGCGGAAACTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|