Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2864574..2864728 | Replicon | chromosome |
| Accession | NZ_CP091481 | ||
| Organism | Enterobacter cloacae complex sp. ECL414 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2864590..2864693 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2864574..2864728 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3068_RS13795 (L3068_13795) | 2860852..2862294 | + | 1443 | WP_032636207.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L3068_RS13800 (L3068_13800) | 2862400..2862639 | + | 240 | WP_008500472.1 | YebV family protein | - |
| L3068_RS13805 (L3068_13805) | 2862673..2863317 | - | 645 | WP_014884297.1 | protein-serine/threonine phosphatase | - |
| L3068_RS13810 (L3068_13810) | 2863485..2864426 | + | 942 | WP_014884298.1 | VirK/YbjX family protein | - |
| - | 2864574..2864728 | + | 155 | - | - | Antitoxin |
| - | 2864590..2864693 | - | 104 | - | - | Toxin |
| L3068_RS13815 (L3068_13815) | 2864832..2865170 | - | 339 | WP_014884299.1 | YebY family protein | - |
| L3068_RS13820 (L3068_13820) | 2865187..2866056 | - | 870 | WP_117580418.1 | copper homeostasis membrane protein CopD | - |
| L3068_RS13825 (L3068_13825) | 2866058..2866429 | - | 372 | WP_063433488.1 | CopC domain-containing protein YobA | - |
| L3068_RS13830 (L3068_13830) | 2866567..2866797 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| L3068_RS13835 (L3068_13835) | 2866908..2867558 | + | 651 | WP_117580420.1 | carbon-nitrogen hydrolase family protein | - |
| L3068_RS13840 (L3068_13840) | 2867583..2868245 | + | 663 | WP_117580422.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T233381 NZ_CP091481:c2864693-2864590 [Enterobacter cloacae complex sp. ECL414]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT233381 NZ_CP091481:2864574-2864728 [Enterobacter cloacae complex sp. ECL414]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
