Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2216743..2216911 | Replicon | chromosome |
| Accession | NZ_CP091470 | ||
| Organism | Klebsiella michiganensis strain KO_408 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2216801..2216904 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2216743..2216911 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3249_RS10560 (L3249_10580) | 2211870..2213930 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| L3249_RS10565 (L3249_10585) | 2213937..2214596 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| L3249_RS10570 (L3249_10590) | 2214675..2214905 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| L3249_RS10575 (L3249_10595) | 2215041..2215415 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| L3249_RS10580 (L3249_10600) | 2215420..2216289 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| L3249_RS10585 (L3249_10605) | 2216306..2216644 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2216743..2216911 | - | 169 | - | - | Antitoxin |
| - | 2216801..2216904 | + | 104 | - | - | Toxin |
| L3249_RS10590 (L3249_10610) | 2217029..2217988 | - | 960 | WP_088168007.1 | spore coat protein U domain-containing protein | - |
| L3249_RS10595 (L3249_10615) | 2218003..2220333 | - | 2331 | WP_195377939.1 | fimbria/pilus outer membrane usher protein | - |
| L3249_RS10600 (L3249_10620) | 2220336..2221100 | - | 765 | WP_032694916.1 | fimbria/pilus periplasmic chaperone | - |
| L3249_RS10605 (L3249_10625) | 2221119..2221637 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T233362 NZ_CP091470:2216801-2216904 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT233362 NZ_CP091470:c2216911-2216743 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
