Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1968807..1969078 | Replicon | chromosome |
| Accession | NC_011741 | ||
| Organism | Escherichia coli IAI1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1968845..1968948 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1968807..1969078 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECIAI1_RS09625 | 1965964..1967403 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECIAI1_RS09630 | 1967521..1967757 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECIAI1_RS09635 | 1967862..1968053 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECIAI1_RS09640 | 1968054..1968710 | - | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| - | 1968807..1969078 | + | 272 | - | - | Antitoxin |
| - | 1968845..1968948 | - | 104 | - | - | Toxin |
| ECIAI1_RS09650 | 1969106..1969447 | - | 342 | WP_000976472.1 | YebY family protein | - |
| ECIAI1_RS09655 | 1969460..1970332 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| ECIAI1_RS09660 | 1970336..1970710 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| ECIAI1_RS09665 | 1970849..1971079 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECIAI1_RS09670 | 1971181..1971837 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECIAI1_RS09675 | 1971861..1972523 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T23331 NC_011741:c1968948-1968845 [Escherichia coli IAI1]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT23331 NC_011741:1968807-1969078 [Escherichia coli IAI1]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
