Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | rlegTA/AbiEii-AbiEi |
| Location | 230568..232081 | Replicon | plasmid unnamed1 |
| Accession | NZ_CP091425 | ||
| Organism | Methylobacter sp. YRD-M1 | ||
Toxin (Protein)
| Gene name | rlegT | Uniprot ID | - |
| Locus tag | LZ558_RS21875 | Protein ID | WP_268120927.1 |
| Coordinates | 231164..232081 (+) | Length | 306 a.a. |
Antitoxin (Protein)
| Gene name | rlegA | Uniprot ID | - |
| Locus tag | LZ558_RS21870 | Protein ID | WP_268120926.1 |
| Coordinates | 230568..231167 (+) | Length | 200 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ558_RS21835 (LZ558_21775) | 226240..226767 | + | 528 | WP_268120920.1 | hypothetical protein | - |
| LZ558_RS21840 (LZ558_21780) | 226906..227598 | - | 693 | WP_268120921.1 | hypothetical protein | - |
| LZ558_RS21845 (LZ558_21785) | 227694..228209 | - | 516 | WP_268120922.1 | SMI1/KNR4 family protein | - |
| LZ558_RS21850 (LZ558_21790) | 228225..229109 | - | 885 | WP_268120923.1 | HNH endonuclease | - |
| LZ558_RS21855 (LZ558_21795) | 229112..229516 | - | 405 | WP_268120924.1 | hypothetical protein | - |
| LZ558_RS21860 | 229805..229936 | - | 132 | WP_268120925.1 | hypothetical protein | - |
| LZ558_RS21865 (LZ558_21800) | 230103..230370 | + | 268 | Protein_224 | replication protein | - |
| LZ558_RS21870 (LZ558_21805) | 230568..231167 | + | 600 | WP_268120926.1 | AbiEi antitoxin N-terminal domain-containing protein | Antitoxin |
| LZ558_RS21875 (LZ558_21810) | 231164..232081 | + | 918 | WP_268120927.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin |
| LZ558_RS21880 (LZ558_21815) | 232477..233159 | + | 683 | WP_268120928.1 | IS1 family transposase | - |
| LZ558_RS21885 (LZ558_21820) | 233495..233728 | - | 234 | WP_268120929.1 | hypothetical protein | - |
| LZ558_RS21890 (LZ558_21825) | 233766..234164 | - | 399 | WP_268120930.1 | cupin domain-containing protein | - |
| LZ558_RS21895 (LZ558_21830) | 234210..235877 | - | 1668 | WP_268120931.1 | sigma 54-interacting transcriptional regulator | - |
| LZ558_RS21900 (LZ558_21835) | 235894..236739 | - | 846 | WP_268120932.1 | ZIP family metal transporter | - |
| LZ558_RS21905 (LZ558_21840) | 236791..237078 | - | 288 | WP_268120933.1 | zinc ribbon domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..349359 | 349359 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 306 a.a. Molecular weight: 34385.42 Da Isoelectric Point: 6.3473
>T233301 WP_268120927.1 NZ_CP091425:231164-232081 [Methylobacter sp. YRD-M1]
MTNGNIAASVRNRLLNHARTKRQDFNLVLTRYAIERLLYRISISKYADQFLLKGALLFDLWFDIPHRPTRDADFLSFGSA
DLTYIEGIFKDICELDVLDGMAFQSATVRAAEIRKEAHYAGVRVTLLGLLDGARCQVQVDMGFGDAVTPGPEEATYPVIL
SEFAAPKLSAYPRYTVVAEKFEALSSLGIANSRMKDYFDLWILACHTDFEGDILCQAVRTTFERRKTMLLDQLPFGLTET
FAQDAQKQVQWQAFLRKNKLDALALEEVVSQLAVFMRPVVDAASTHQAFSWLWQAGGPWRPTSPS
MTNGNIAASVRNRLLNHARTKRQDFNLVLTRYAIERLLYRISISKYADQFLLKGALLFDLWFDIPHRPTRDADFLSFGSA
DLTYIEGIFKDICELDVLDGMAFQSATVRAAEIRKEAHYAGVRVTLLGLLDGARCQVQVDMGFGDAVTPGPEEATYPVIL
SEFAAPKLSAYPRYTVVAEKFEALSSLGIANSRMKDYFDLWILACHTDFEGDILCQAVRTTFERRKTMLLDQLPFGLTET
FAQDAQKQVQWQAFLRKNKLDALALEEVVSQLAVFMRPVVDAASTHQAFSWLWQAGGPWRPTSPS
Download Length: 918 bp
>T233301 NZ_HG738867:1397815-1397991 [Escherichia coli str. K-12 substr. MC4100]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA
Antitoxin
Download Length: 200 a.a. Molecular weight: 22698.34 Da Isoelectric Point: 10.0418
>AT233301 WP_268120926.1 NZ_CP091425:230568-231167 [Methylobacter sp. YRD-M1]
MENTYQRILDFAHTHALIRPSDLAAQGLPRVALTRLVRRGQLIRISRGLYARPDRPVSEHGALAETARKYPHAIVCLLSA
LRFHDLTTQSPFEVWLAIPNKARAPRIDYPPLRIIRFSGAALTEGVEVHQIDGVPVRITNVARTVADCFKYRNKIGLEVA
LEALHESWREKRVSMDELWHYASLCRVANVMRPYMESLP
MENTYQRILDFAHTHALIRPSDLAAQGLPRVALTRLVRRGQLIRISRGLYARPDRPVSEHGALAETARKYPHAIVCLLSA
LRFHDLTTQSPFEVWLAIPNKARAPRIDYPPLRIIRFSGAALTEGVEVHQIDGVPVRITNVARTVADCFKYRNKIGLEVA
LEALHESWREKRVSMDELWHYASLCRVANVMRPYMESLP
Download Length: 600 bp
>AT233301 NZ_HG738867:1398037-1398453 [Escherichia coli str. K-12 substr. MC4100]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
CCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
CCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|