Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicB |
| Location | 1022327..1023006 | Replicon | chromosome |
| Accession | NZ_CP091361 | ||
| Organism | Acinetobacter baumannii strain AB177-VUB | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | S3TWT7 |
| Locus tag | L2Z13_RS05005 | Protein ID | WP_000838146.1 |
| Coordinates | 1022824..1023006 (-) | Length | 61 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | N9L2H6 |
| Locus tag | L2Z13_RS05000 | Protein ID | WP_000966688.1 |
| Coordinates | 1022327..1022731 (-) | Length | 135 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Z13_RS04960 (L2Z13_04960) | 1017366..1017713 | - | 348 | WP_057078074.1 | hypothetical protein | - |
| L2Z13_RS04965 (L2Z13_04965) | 1017837..1018346 | - | 510 | WP_057078075.1 | Rha family transcriptional regulator | - |
| L2Z13_RS04970 (L2Z13_04970) | 1018482..1019411 | - | 930 | WP_057078076.1 | ORF6N domain-containing protein | - |
| L2Z13_RS04975 (L2Z13_04975) | 1019561..1019827 | + | 267 | WP_000774879.1 | hypothetical protein | - |
| L2Z13_RS04980 (L2Z13_04980) | 1019870..1020361 | - | 492 | WP_000755583.1 | DUF4468 domain-containing protein | - |
| L2Z13_RS04985 (L2Z13_04985) | 1020447..1021193 | - | 747 | WP_000599537.1 | hypothetical protein | - |
| L2Z13_RS04990 (L2Z13_04990) | 1021255..1021638 | - | 384 | WP_000725052.1 | hypothetical protein | - |
| L2Z13_RS04995 (L2Z13_04995) | 1021703..1022227 | - | 525 | WP_000721574.1 | DUF4468 domain-containing protein | - |
| L2Z13_RS05000 (L2Z13_05000) | 1022327..1022731 | - | 405 | WP_000966688.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| L2Z13_RS05005 (L2Z13_05005) | 1022824..1023006 | - | 183 | WP_000838146.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| L2Z13_RS05010 (L2Z13_05010) | 1023075..1023404 | - | 330 | WP_079289049.1 | hypothetical protein | - |
| L2Z13_RS05015 (L2Z13_05015) | 1023332..1023847 | - | 516 | WP_084055044.1 | hypothetical protein | - |
| L2Z13_RS05020 (L2Z13_05020) | 1023917..1024834 | - | 918 | WP_084055043.1 | phage tail tube protein | - |
| L2Z13_RS05025 (L2Z13_05025) | 1024887..1025873 | - | 987 | WP_084055042.1 | phage tail protein | - |
| L2Z13_RS05030 (L2Z13_05030) | 1025873..1026223 | - | 351 | WP_057078079.1 | hypothetical protein | - |
| L2Z13_RS05035 (L2Z13_05035) | 1026305..1026589 | - | 285 | WP_057078080.1 | hypothetical protein | - |
| L2Z13_RS05040 (L2Z13_05040) | 1026637..1027035 | - | 399 | WP_057078081.1 | hypothetical protein | - |
| L2Z13_RS05045 (L2Z13_05045) | 1027037..1027405 | - | 369 | WP_057078082.1 | hypothetical protein | - |
| L2Z13_RS05050 (L2Z13_05050) | 1027377..1027784 | - | 408 | WP_049592426.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1002297..1056299 | 54002 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 61 a.a. Molecular weight: 6695.84 Da Isoelectric Point: 10.5523
>T233239 WP_000838146.1 NZ_CP091361:c1023006-1022824 [Acinetobacter baumannii]
VKSLDLIKMIEADGWYEVRVSGSHHHFKHPTKKGLVTIPHPKKDLPNGTVKSILKQAGLN
VKSLDLIKMIEADGWYEVRVSGSHHHFKHPTKKGLVTIPHPKKDLPNGTVKSILKQAGLN
Download Length: 183 bp
>T233239 NZ_HF571988:930925-931248 [Yersinia enterocolitica (type O:5) str. YE53/03]
ATGAAAATTCTACCGGCTACAATTTCGCGGGCGGCGAAGCCCTGCCTGCCACCCGTTGCAGTCTGGCAATTGCTTCTTAC
ACGGCTACTGGAAAAACACTATGGTCTGACCCTGAACGATACGCCGTTCAGTGATGAAACCGTTATAAAGGAACATTTCG
ATGCCGGTATCACTCTCGCTAATGCCATTAACTTTCTAGTGGAAAAGTACGAACTGGTTCGTATCGATCGCAGAGGGTTT
AGCTGGCAAGAACAAACGCCATATCTCACGAATATTGATATCATGAGGGCCCGCCGCGATCTGGGTTTATTAAATCGTAA
TTAG
ATGAAAATTCTACCGGCTACAATTTCGCGGGCGGCGAAGCCCTGCCTGCCACCCGTTGCAGTCTGGCAATTGCTTCTTAC
ACGGCTACTGGAAAAACACTATGGTCTGACCCTGAACGATACGCCGTTCAGTGATGAAACCGTTATAAAGGAACATTTCG
ATGCCGGTATCACTCTCGCTAATGCCATTAACTTTCTAGTGGAAAAGTACGAACTGGTTCGTATCGATCGCAGAGGGTTT
AGCTGGCAAGAACAAACGCCATATCTCACGAATATTGATATCATGAGGGCCCGCCGCGATCTGGGTTTATTAAATCGTAA
TTAG
Antitoxin
Download Length: 135 a.a. Molecular weight: 14647.69 Da Isoelectric Point: 4.4328
>AT233239 WP_000966688.1 NZ_CP091361:c1022731-1022327 [Acinetobacter baumannii]
MLYPIAIERGSDTEAFGVTVPDIPGCFSAGDTLEEAIENVKEAISGHLEILAEDGEEIPLASELVKFVDDPEYKGMIWAV
TEVDVSRYLGKPEKINVTLPSRLIRKIDENVGKGKRYTTRSAFLAAGAEKLLHA
MLYPIAIERGSDTEAFGVTVPDIPGCFSAGDTLEEAIENVKEAISGHLEILAEDGEEIPLASELVKFVDDPEYKGMIWAV
TEVDVSRYLGKPEKINVTLPSRLIRKIDENVGKGKRYTTRSAFLAAGAEKLLHA
Download Length: 405 bp
>AT233239 NZ_HF571988:930587-930904 [Yersinia enterocolitica (type O:5) str. YE53/03]
ATGAGCAACATCATTTGGGGCCTGCAGCGCGATATCACGCCGCGCCTGGGAACACGTCTGGTGCAGGAGGGCAACCAGCT
GCACTACCTGGCTGACCGGGCCTGTATCACAGGTAAGTTCAGTGATGCCGAATGTCTTAAGCTGGATGTGGCATTTCCGC
ATTTTATCAGCCGGATGGAATCCATGCTGAGCACGGGTGAAATGAATCCTCGCCACGCCCACTGCGTCACCCTGTACCAC
AACGGTTTTACCTGCGAAGCCGATACCCTTGGCAGTTGTGGCTATGTATACGTCGCTGTTTATTCCACTCAGCGCTAA
ATGAGCAACATCATTTGGGGCCTGCAGCGCGATATCACGCCGCGCCTGGGAACACGTCTGGTGCAGGAGGGCAACCAGCT
GCACTACCTGGCTGACCGGGCCTGTATCACAGGTAAGTTCAGTGATGCCGAATGTCTTAAGCTGGATGTGGCATTTCCGC
ATTTTATCAGCCGGATGGAATCCATGCTGAGCACGGGTGAAATGAATCCTCGCCACGCCCACTGCGTCACCCTGTACCAC
AACGGTTTTACCTGCGAAGCCGATACCCTTGGCAGTTGTGGCTATGTATACGTCGCTGTTTATTCCACTCAGCGCTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|