Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2686847..2687048 | Replicon | chromosome |
| Accession | NZ_CP091319 | ||
| Organism | Enterobacter sp. JH25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2686852..2686955 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2686847..2687048 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Y28_RS12890 | 2683115..2684557 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L2Y28_RS12895 | 2684662..2684901 | + | 240 | WP_006811010.1 | YebV family protein | - |
| L2Y28_RS12900 | 2684936..2685580 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| L2Y28_RS12905 | 2685748..2686728 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| L2Y28_RS12910 | 2686774..2686971 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2686847..2687048 | + | 202 | - | - | Antitoxin |
| - | 2686852..2686955 | - | 104 | - | - | Toxin |
| L2Y28_RS12915 | 2687097..2687435 | - | 339 | WP_022648464.1 | YebY family protein | - |
| L2Y28_RS12920 | 2687452..2688321 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| L2Y28_RS12925 | 2688323..2688694 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| L2Y28_RS12930 | 2688832..2689062 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| L2Y28_RS12935 | 2689174..2689812 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| L2Y28_RS12940 | 2689837..2690499 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T233126 NZ_CP091319:c2686955-2686852 [Enterobacter sp. JH25]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT233126 NZ_CP091319:2686847-2687048 [Enterobacter sp. JH25]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
