Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 200762..200905 Replicon chromosome
Accession NZ_CP091300
Organism Salmonella enterica subsp. enterica serovar Bovismorbificans strain SB699

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 200800..200903 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 200762..200905 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
L1971_RS01730 197186..197884 - 699 WP_000944282.1 exodeoxyribonuclease X -
L1971_RS01735 197908..198564 - 657 WP_000100249.1 carbon-nitrogen hydrolase family protein -
L1971_RS01740 198672..198902 - 231 WP_000856224.1 DNA polymerase III subunit theta -
L1971_RS01745 199040..199414 + 375 WP_000168395.1 CopC domain-containing protein YobA -
L1971_RS01750 199415..200290 + 876 WP_000979686.1 copper homeostasis membrane protein CopD -
L1971_RS01755 200307..200660 + 354 WP_000722368.1 YebY family protein -
- 200762..200905 - 144 - - Antitoxin
- 200800..200903 + 104 - - Toxin
L1971_RS01760 201033..201956 - 924 Protein_217 tyrosine-type recombinase/integrase -
L1971_RS01765 202220..202681 - 462 Protein_218 DNA breaking-rejoining protein -
L1971_RS01770 202670..202861 + 192 Protein_219 glycoside hydrolase family 19 protein -
L1971_RS01775 202915..203448 + 534 WP_001050883.1 DUF2514 domain-containing protein -
L1971_RS01780 203705..203872 - 168 WP_000789530.1 lytic enzyme -
L1971_RS01785 203937..204125 - 189 WP_001576014.1 hypothetical protein -
L1971_RS01790 204180..204440 + 261 Protein_223 DUF1441 family protein -
L1971_RS01795 204442..204657 + 216 Protein_224 shikimate transporter -
L1971_RS01800 204655..204999 + 345 Protein_225 macro domain-containing protein -
L1971_RS01805 205009..205479 + 471 Protein_226 tail fiber assembly protein -
L1971_RS01810 205576..205776 - 201 WP_001751604.1 PagK family vesicle-borne virulence factor -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 195098..205479 10381


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T233080 NZ_CP091300:200800-200903 [Salmonella enterica subsp. enterica serovar Bovismorbificans]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT233080 NZ_CP091300:c200905-200762 [Salmonella enterica subsp. enterica serovar Bovismorbificans]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References