Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1275012..1275280 | Replicon | chromosome |
| Accession | NC_011740 | ||
| Organism | Escherichia fergusonii ATCC 35469 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1275139..1275242 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1275012..1275280 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EFER_RS06215 | 1271561..1272223 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| EFER_RS06220 | 1272247..1272921 | - | 675 | WP_000824159.1 | carbon-nitrogen hydrolase family protein | - |
| EFER_RS06225 | 1273011..1273241 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| EFER_RS06230 | 1273380..1273754 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| EFER_RS06235 | 1273757..1274629 | + | 873 | WP_000928497.1 | copper homeostasis membrane protein CopD | - |
| EFER_RS06240 | 1274641..1274982 | + | 342 | WP_000976176.1 | YebY family protein | - |
| - | 1275012..1275280 | - | 269 | - | - | Antitoxin |
| - | 1275139..1275242 | + | 104 | - | - | Toxin |
| EFER_RS06250 | 1275377..1276033 | + | 657 | WP_000812748.1 | protein-serine/threonine phosphatase | - |
| EFER_RS06255 | 1276034..1276225 | - | 192 | WP_002431587.1 | YebW family protein | - |
| EFER_RS06260 | 1276330..1276566 | - | 237 | WP_002431586.1 | DUF1480 family protein | - |
| EFER_RS06265 | 1276685..1278124 | - | 1440 | WP_015953343.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T23301 NC_011740:1275139-1275242 [Escherichia fergusonii ATCC 35469]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT23301 NC_011740:c1275280-1275012 [Escherichia fergusonii ATCC 35469]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
