Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1674981..1675121 | Replicon | chromosome |
| Accession | NZ_CP091125 | ||
| Organism | Serratia marcescens strain CM2015_854 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1675025..1675121 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1674981..1675121 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2D47_RS08270 (L2D47_08270) | 1670184..1670609 | + | 426 | WP_038875849.1 | RNA polymerase-binding protein DksA | - |
| L2D47_RS08275 (L2D47_08275) | 1670804..1671757 | + | 954 | WP_038875880.1 | prolyl aminopeptidase | - |
| L2D47_RS08280 (L2D47_08280) | 1671791..1672021 | - | 231 | WP_033638067.1 | DNA polymerase III subunit theta | - |
| L2D47_RS08285 (L2D47_08285) | 1672362..1672880 | + | 519 | WP_038875847.1 | non-heme ferritin | - |
| L2D47_RS08290 (L2D47_08290) | 1673172..1673588 | + | 417 | WP_055313801.1 | CopC domain-containing protein YobA | - |
| L2D47_RS08295 (L2D47_08295) | 1673591..1674472 | + | 882 | WP_048233440.1 | copper homeostasis membrane protein CopD | - |
| L2D47_RS08300 (L2D47_08300) | 1674542..1674883 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 1674981..1675121 | - | 141 | - | - | Antitoxin |
| - | 1675025..1675121 | + | 97 | - | - | Toxin |
| L2D47_RS08305 (L2D47_08305) | 1675200..1675370 | - | 171 | WP_226908983.1 | hypothetical protein | - |
| L2D47_RS08310 (L2D47_08310) | 1675830..1675928 | + | 99 | WP_230122671.1 | DUF1367 family protein | - |
| L2D47_RS08315 (L2D47_08315) | 1676176..1676985 | - | 810 | WP_174157784.1 | hypothetical protein | - |
| L2D47_RS08320 (L2D47_08320) | 1677592..1677999 | + | 408 | WP_055312139.1 | hypothetical protein | - |
| L2D47_RS08325 (L2D47_08325) | 1678135..1678485 | + | 351 | WP_004940949.1 | DUF4377 domain-containing protein | - |
| L2D47_RS08330 (L2D47_08330) | 1678536..1678838 | - | 303 | WP_049202506.1 | hypothetical protein | - |
| L2D47_RS08335 (L2D47_08335) | 1678838..1679680 | - | 843 | WP_055312138.1 | DUF4225 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T232809 NZ_CP091125:1675025-1675121 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT232809 NZ_CP091125:c1675121-1674981 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
