Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1982910..1983050 | Replicon | chromosome |
| Accession | NZ_CP091120 | ||
| Organism | Serratia marcescens strain CM2019_254 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1982954..1983050 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1982910..1983050 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2D50_RS09410 (L2D50_09410) | 1978237..1978575 | + | 339 | WP_240275408.1 | RidA family protein | - |
| L2D50_RS09415 (L2D50_09415) | 1978732..1979685 | + | 954 | WP_049209433.1 | prolyl aminopeptidase | - |
| L2D50_RS09420 (L2D50_09420) | 1979716..1979946 | - | 231 | WP_043141621.1 | DNA polymerase III subunit theta | - |
| L2D50_RS09425 (L2D50_09425) | 1980291..1980809 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| L2D50_RS09430 (L2D50_09430) | 1981134..1981517 | + | 384 | WP_025302450.1 | CopC domain-containing protein YobA | - |
| L2D50_RS09435 (L2D50_09435) | 1981520..1982401 | + | 882 | WP_240275409.1 | copper homeostasis membrane protein CopD | - |
| L2D50_RS09440 (L2D50_09440) | 1982471..1982812 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 1982910..1983050 | - | 141 | - | - | Antitoxin |
| - | 1982954..1983050 | + | 97 | - | - | Toxin |
| L2D50_RS09445 (L2D50_09445) | 1983295..1983702 | + | 408 | WP_167324229.1 | hypothetical protein | - |
| L2D50_RS09450 (L2D50_09450) | 1983838..1984188 | + | 351 | WP_025302454.1 | DUF4377 domain-containing protein | - |
| L2D50_RS09455 (L2D50_09455) | 1984227..1985063 | - | 837 | WP_167324230.1 | aminoglycoside phosphotransferase family protein | - |
| L2D50_RS09460 (L2D50_09460) | 1985264..1986463 | + | 1200 | WP_025302456.1 | trans-2-enoyl-CoA reductase family protein | - |
| L2D50_RS09465 (L2D50_09465) | 1986621..1987184 | + | 564 | WP_025302458.1 | DUF2975 domain-containing protein | - |
| L2D50_RS09470 (L2D50_09470) | 1987159..1987407 | + | 249 | WP_167324231.1 | helix-turn-helix transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T232737 NZ_CP091120:1982954-1983050 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT232737 NZ_CP091120:c1983050-1982910 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
