Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1977130..1977273 | Replicon | chromosome |
| Accession | NZ_CP091081 | ||
| Organism | Enterobacter roggenkampii strain GD21SC1505 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1977165..1977268 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1977130..1977273 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1S38_RS09845 (L1S38_09845) | 1973613..1974275 | - | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
| L1S38_RS09850 (L1S38_09850) | 1974300..1974950 | - | 651 | Protein_1921 | carbon-nitrogen hydrolase family protein | - |
| L1S38_RS09855 (L1S38_09855) | 1975061..1975291 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| L1S38_RS09860 (L1S38_09860) | 1975429..1975800 | + | 372 | WP_059360369.1 | CopC domain-containing protein YobA | - |
| L1S38_RS09865 (L1S38_09865) | 1975802..1976671 | + | 870 | WP_058653387.1 | copper homeostasis membrane protein CopD | - |
| L1S38_RS09870 (L1S38_09870) | 1976688..1977026 | + | 339 | WP_008500468.1 | YebY family protein | - |
| - | 1977130..1977273 | - | 144 | - | - | Antitoxin |
| - | 1977165..1977268 | + | 104 | - | - | Toxin |
| L1S38_RS09875 (L1S38_09875) | 1977432..1978373 | - | 942 | WP_059360365.1 | VirK/YbjX family protein | - |
| L1S38_RS09880 (L1S38_09880) | 1978539..1979183 | + | 645 | WP_059360363.1 | protein-serine/threonine phosphatase | - |
| L1S38_RS09885 (L1S38_09885) | 1979218..1979457 | - | 240 | WP_008500472.1 | YebV family protein | - |
| L1S38_RS09890 (L1S38_09890) | 1979564..1981012 | - | 1449 | WP_197971081.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T232702 NZ_CP091081:1977165-1977268 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT232702 NZ_CP091081:c1977273-1977130 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
