Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2016065..2016210 | Replicon | chromosome |
| Accession | NZ_CP091068 | ||
| Organism | Klebsiella pneumoniae strain WSCRKP | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2016101..2016203 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2016065..2016210 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0980_RS09835 (L0980_09835) | 2011195..2013255 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| L0980_RS09840 (L0980_09840) | 2013259..2013918 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| L0980_RS09845 (L0980_09845) | 2013997..2014227 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L0980_RS09850 (L0980_09850) | 2014340..2014714 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| L0980_RS09855 (L0980_09855) | 2014718..2015587 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| L0980_RS09860 (L0980_09860) | 2015604..2015942 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2016065..2016210 | - | 146 | - | - | Antitoxin |
| - | 2016101..2016203 | + | 103 | - | - | Toxin |
| L0980_RS09865 (L0980_09865) | 2016578..2016721 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| L0980_RS09870 (L0980_09870) | 2016826..2017794 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| L0980_RS09875 (L0980_09875) | 2017951..2018604 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| L0980_RS09880 (L0980_09880) | 2018601..2018792 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L0980_RS09885 (L0980_09885) | 2018890..2019129 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L0980_RS09890 (L0980_09890) | 2019245..2020678 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T232667 NZ_CP091068:2016101-2016203 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT232667 NZ_CP091068:c2016210-2016065 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
