Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1777518..1777789 | Replicon | chromosome |
| Accession | NZ_CP091065 | ||
| Organism | Escherichia coli strain DOC14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1777648..1777751 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1777518..1777789 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1123_RS08540 | 1774073..1774735 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L1123_RS08545 | 1774759..1775415 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L1123_RS08550 | 1775517..1775747 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L1123_RS08555 | 1775886..1776260 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L1123_RS08560 | 1776264..1777136 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| L1123_RS08565 | 1777149..1777490 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1777518..1777789 | - | 272 | - | - | Antitoxin |
| - | 1777648..1777751 | + | 104 | - | - | Toxin |
| L1123_RS08570 | 1777886..1778542 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| L1123_RS08575 | 1778543..1778734 | - | 192 | WP_000457842.1 | YebW family protein | - |
| L1123_RS08580 | 1778839..1779075 | - | 237 | WP_001295499.1 | YebV family protein | - |
| L1123_RS08585 | 1779193..1780632 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T232619 NZ_CP091065:1777648-1777751 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT232619 NZ_CP091065:c1777789-1777518 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
