Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1897573..1897718 | Replicon | chromosome |
| Accession | NZ_CP091048 | ||
| Organism | Klebsiella pneumoniae strain AHSWKP25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1897609..1897711 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1897573..1897718 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1P15_RS09145 | 1892703..1894763 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| L1P15_RS09150 | 1894767..1895426 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| L1P15_RS09155 | 1895505..1895735 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L1P15_RS09160 | 1895848..1896222 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| L1P15_RS09165 | 1896226..1897095 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| L1P15_RS09170 | 1897112..1897450 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1897573..1897718 | - | 146 | - | - | Antitoxin |
| - | 1897609..1897711 | + | 103 | - | - | Toxin |
| L1P15_RS09175 | 1898087..1898230 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| L1P15_RS09180 | 1898335..1899303 | - | 969 | WP_162472361.1 | VirK/YbjX family protein | - |
| L1P15_RS09185 | 1899460..1900113 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| L1P15_RS09190 | 1900110..1900301 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L1P15_RS09195 | 1900399..1900638 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L1P15_RS09200 | 1900754..1902187 | - | 1434 | WP_166690237.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T232551 NZ_CP091048:1897609-1897711 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT232551 NZ_CP091048:c1897718-1897573 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
