Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2106422..2106693 | Replicon | chromosome |
| Accession | NZ_CP091029 | ||
| Organism | Escherichia coli strain STEC384 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2106552..2106655 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2106422..2106693 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1P14_RS10375 | 2102977..2103639 | - | 663 | WP_235399518.1 | exodeoxyribonuclease X | - |
| L1P14_RS10380 | 2103663..2104319 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L1P14_RS10385 | 2104421..2104651 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L1P14_RS10390 | 2104790..2105164 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| L1P14_RS10395 | 2105168..2106040 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| L1P14_RS10400 | 2106053..2106394 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2106422..2106693 | - | 272 | - | - | Antitoxin |
| - | 2106552..2106655 | + | 104 | - | - | Toxin |
| L1P14_RS10405 | 2106790..2107446 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| L1P14_RS10410 | 2107447..2107638 | - | 192 | WP_001296140.1 | YebW family protein | - |
| L1P14_RS10415 | 2107743..2107979 | - | 237 | WP_001295499.1 | YebV family protein | - |
| L1P14_RS10420 | 2108097..2109536 | - | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T232487 NZ_CP091029:2106552-2106655 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT232487 NZ_CP091029:c2106693-2106422 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
