Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 4558210..4558707 Replicon chromosome
Accession NZ_CP091024
Organism Escherichia coli strain STEC379

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag L1P13_RS22500 Protein ID WP_001173343.1
Coordinates 4558210..4558383 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag L1P13_RS22505 Protein ID WP_000398619.1
Coordinates 4558411..4558707 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
L1P13_RS22490 (4554880) 4554880..4556337 + 1458 WP_000856834.1 dipeptide/tripeptide permease DtpC -
L1P13_RS22495 (4556574) 4556574..4558091 + 1518 WP_001295074.1 lysine--tRNA ligase -
L1P13_RS22500 (4558210) 4558210..4558383 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
L1P13_RS22505 (4558411) 4558411..4558707 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
L1P13_RS22510 (4558934) 4558934..4559206 - 273 WP_000405647.1 GNAT family N-acetyltransferase -
L1P13_RS22515 (4559218) 4559218..4559448 - 231 WP_000371700.1 4Fe-4S mono-cluster protein YjdI -
L1P13_RS22520 (4559629) 4559629..4561260 + 1632 WP_235399421.1 sensor histidine kinase -
L1P13_RS22525 (4561257) 4561257..4561976 + 720 WP_000611288.1 two-component system response regulator DcuR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T232438 WP_001173343.1 NZ_CP091024:c4558383-4558210 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

>T232438 NZ_CP127297:3144077-3144184 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCGGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT232438 WP_000398619.1 NZ_CP091024:c4558707-4558411 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp

>AT232438 NZ_CP127297:c3144024-3143963 [Escherichia coli]
TGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References