Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2156721..2156992 | Replicon | chromosome |
| Accession | NZ_CP091024 | ||
| Organism | Escherichia coli strain STEC379 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2156851..2156954 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2156721..2156992 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1P13_RS10625 | 2153276..2153938 | - | 663 | WP_235399518.1 | exodeoxyribonuclease X | - |
| L1P13_RS10630 | 2153962..2154618 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L1P13_RS10635 | 2154720..2154950 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L1P13_RS10640 | 2155089..2155463 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| L1P13_RS10645 | 2155467..2156339 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| L1P13_RS10650 | 2156352..2156693 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2156721..2156992 | - | 272 | - | - | Antitoxin |
| - | 2156851..2156954 | + | 104 | - | - | Toxin |
| L1P13_RS10655 | 2157089..2157745 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| L1P13_RS10660 | 2157746..2157937 | - | 192 | WP_001296140.1 | YebW family protein | - |
| L1P13_RS10665 | 2158042..2158278 | - | 237 | WP_001295499.1 | YebV family protein | - |
| L1P13_RS10670 | 2158396..2159835 | - | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T232424 NZ_CP091024:2156851-2156954 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT232424 NZ_CP091024:c2156992-2156721 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
