Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2060066..2060334 | Replicon | chromosome |
| Accession | NZ_CP091022 | ||
| Organism | Escherichia coli strain STEC276 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2060193..2060296 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2060066..2060334 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1O93_RS09870 | 2056619..2057281 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L1O93_RS09875 | 2057305..2057961 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L1O93_RS09880 | 2058063..2058293 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L1O93_RS09885 | 2058432..2058806 | + | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| L1O93_RS09890 | 2058810..2059682 | + | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| L1O93_RS09895 | 2059695..2060036 | + | 342 | WP_001515445.1 | YebY family protein | - |
| - | 2060066..2060334 | - | 269 | - | - | Antitoxin |
| - | 2060193..2060296 | + | 104 | - | - | Toxin |
| L1O93_RS09900 | 2060431..2061087 | + | 657 | WP_001515444.1 | protein-serine/threonine phosphatase | - |
| L1O93_RS09905 | 2061088..2061279 | - | 192 | WP_001296140.1 | YebW family protein | - |
| L1O93_RS09910 | 2061384..2061620 | - | 237 | WP_001295499.1 | YebV family protein | - |
| L1O93_RS09915 | 2061738..2063177 | - | 1440 | WP_024189843.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | stx2A / stx2B | 1992559..2076172 | 83613 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T232394 NZ_CP091022:2060193-2060296 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT232394 NZ_CP091022:c2060334-2060066 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
