Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2202698..2202932 | Replicon | chromosome |
| Accession | NZ_CP091018 | ||
| Organism | Escherichia coli strain STEC307 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2202828..2202931 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2202698..2202932 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1O94_RS10830 | 2199253..2199915 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L1O94_RS10835 | 2199939..2200595 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L1O94_RS10840 | 2200697..2200927 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L1O94_RS10845 | 2201066..2201440 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| L1O94_RS10850 | 2201444..2202316 | + | 873 | WP_033813010.1 | copper homeostasis membrane protein CopD | - |
| L1O94_RS10855 | 2202329..2202670 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2202698..2202932 | - | 235 | - | - | Antitoxin |
| - | 2202828..2202931 | + | 104 | - | - | Toxin |
| L1O94_RS10860 | 2203063..2204139 | - | 1077 | WP_063103093.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| L1O94_RS10865 | 2204105..2204386 | - | 282 | WP_137689817.1 | excisionase | - |
| L1O94_RS10870 | 2204493..2204681 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2204497..2204675 | + | 179 | NuclAT_0 | - | - |
| - | 2204497..2204675 | + | 179 | NuclAT_0 | - | - |
| - | 2204497..2204675 | + | 179 | NuclAT_0 | - | - |
| - | 2204497..2204675 | + | 179 | NuclAT_0 | - | - |
| L1O94_RS10875 | 2204674..2204868 | - | 195 | WP_021500490.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| L1O94_RS10880 | 2204932..2205984 | - | 1053 | WP_001004422.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2197196..2258070 | 60874 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T232340 NZ_CP091018:2202828-2202931 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT232340 NZ_CP091018:c2202932-2202698 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
