Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2202688..2202922 | Replicon | chromosome |
| Accession | NZ_CP091016 | ||
| Organism | Escherichia coli strain STEC306 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2202818..2202921 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2202688..2202922 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1O96_RS10835 | 2199243..2199905 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L1O96_RS10840 | 2199929..2200585 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L1O96_RS10845 | 2200687..2200917 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L1O96_RS10850 | 2201056..2201430 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| L1O96_RS10855 | 2201434..2202306 | + | 873 | WP_033813010.1 | copper homeostasis membrane protein CopD | - |
| L1O96_RS10860 | 2202319..2202660 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2202688..2202922 | - | 235 | - | - | Antitoxin |
| - | 2202818..2202921 | + | 104 | - | - | Toxin |
| L1O96_RS10865 | 2203053..2204129 | - | 1077 | WP_063103093.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| L1O96_RS10870 | 2204095..2204376 | - | 282 | WP_137689817.1 | excisionase | - |
| L1O96_RS10875 | 2204483..2204671 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2204487..2204665 | + | 179 | NuclAT_0 | - | - |
| - | 2204487..2204665 | + | 179 | NuclAT_0 | - | - |
| - | 2204487..2204665 | + | 179 | NuclAT_0 | - | - |
| - | 2204487..2204665 | + | 179 | NuclAT_0 | - | - |
| L1O96_RS10880 | 2204664..2204858 | - | 195 | WP_021500490.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| L1O96_RS10885 | 2204922..2205974 | - | 1053 | WP_001004422.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2197186..2258060 | 60874 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T232312 NZ_CP091016:2202818-2202921 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT232312 NZ_CP091016:c2202922-2202688 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
