Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1741897..1742007 | Replicon | chromosome |
| Accession | NZ_CP090967 | ||
| Organism | Edwardsiella piscicida strain KE5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1741904..1742005 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1741897..1742007 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1P07_RS08015 (L1P07_08015) | 1737195..1741940 | + | 4746 | Protein_1536 | LPD5 domain-containing protein | - |
| - | 1741897..1742007 | - | 111 | - | - | Antitoxin |
| - | 1741904..1742005 | + | 102 | - | - | Toxin |
| L1P07_RS08020 (L1P07_08020) | 1743021..1743578 | + | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| L1P07_RS08025 (L1P07_08025) | 1743666..1744025 | + | 360 | WP_012848484.1 | YcgJ family protein | - |
| L1P07_RS08030 (L1P07_08030) | 1744267..1744857 | - | 591 | WP_071818517.1 | hypothetical protein | - |
| L1P07_RS08035 (L1P07_08035) | 1744930..1745403 | - | 474 | WP_012848486.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| L1P07_RS08040 (L1P07_08040) | 1745414..1745692 | - | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| L1P07_RS08045 (L1P07_08045) | 1745750..1746373 | - | 624 | WP_012848489.1 | response regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1699639..1745692 | 46053 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T232240 NZ_CP090967:1741904-1742005 [Edwardsiella piscicida]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT232240 NZ_CP090967:c1742007-1741897 [Edwardsiella piscicida]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
