Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1720319..1720429 | Replicon | chromosome |
| Accession | NZ_CP090962 | ||
| Organism | Edwardsiella piscicida strain CZ12001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1720326..1720427 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1720319..1720429 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1P06_RS07950 (L1P06_07950) | 1715950..1717164 | - | 1215 | WP_015461417.1 | DUF1028 domain-containing protein | - |
| L1P06_RS07955 (L1P06_07955) | 1718207..1718503 | - | 297 | WP_012848441.1 | putative quinol monooxygenase | - |
| L1P06_RS07960 (L1P06_07960) | 1718545..1718940 | - | 396 | WP_015461418.1 | VOC family protein | - |
| L1P06_RS07965 (L1P06_07965) | 1719162..1719443 | - | 282 | WP_015461419.1 | ribbon-helix-helix domain-containing protein | - |
| L1P06_RS07970 (L1P06_07970) | 1719723..1720184 | - | 462 | WP_071840963.1 | tyrosine-type recombinase/integrase | - |
| - | 1720319..1720429 | - | 111 | - | - | Antitoxin |
| - | 1720326..1720427 | + | 102 | - | - | Toxin |
| L1P06_RS07975 (L1P06_07975) | 1721449..1722006 | + | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| L1P06_RS07980 (L1P06_07980) | 1722094..1722453 | + | 360 | WP_012848484.1 | YcgJ family protein | - |
| L1P06_RS07985 (L1P06_07985) | 1722480..1723289 | - | 810 | WP_015461421.1 | hypothetical protein | - |
| L1P06_RS07990 (L1P06_07990) | 1723362..1723835 | - | 474 | WP_012848486.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| L1P06_RS07995 (L1P06_07995) | 1723846..1724124 | - | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| L1P06_RS08000 (L1P06_08000) | 1724182..1724805 | - | 624 | WP_015461423.1 | response regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T232226 NZ_CP090962:1720326-1720427 [Edwardsiella piscicida]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT232226 NZ_CP090962:c1720429-1720319 [Edwardsiella piscicida]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
