Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicB |
| Location | 1784866..1785489 | Replicon | chromosome |
| Accession | NZ_CP090953 | ||
| Organism | Sphingomonas sp. S2-65 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | - |
| Locus tag | LZ586_RS08380 | Protein ID | WP_235079469.1 |
| Coordinates | 1784866..1785051 (+) | Length | 62 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | - |
| Locus tag | LZ586_RS08385 | Protein ID | WP_235079471.1 |
| Coordinates | 1785097..1785489 (+) | Length | 131 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ586_RS08335 (LZ586_08375) | 1781063..1781476 | + | 414 | WP_235079762.1 | YbaN family protein | - |
| LZ586_RS08345 (LZ586_08385) | 1781715..1781945 | + | 231 | WP_235079457.1 | hypothetical protein | - |
| LZ586_RS08350 (LZ586_08390) | 1782165..1782644 | - | 480 | WP_235079458.1 | hypothetical protein | - |
| LZ586_RS08355 (LZ586_08395) | 1782805..1783137 | + | 333 | WP_235079460.1 | hypothetical protein | - |
| LZ586_RS08360 (LZ586_08400) | 1783139..1783789 | + | 651 | WP_235079462.1 | SOS response-associated peptidase family protein | - |
| LZ586_RS08365 (LZ586_08405) | 1783966..1784202 | + | 237 | WP_235079464.1 | YozE family protein | - |
| LZ586_RS08370 (LZ586_08410) | 1784208..1784468 | + | 261 | WP_235079466.1 | hypothetical protein | - |
| LZ586_RS08375 (LZ586_08415) | 1784472..1784771 | + | 300 | WP_235079467.1 | hypothetical protein | - |
| LZ586_RS08380 (LZ586_08420) | 1784866..1785051 | + | 186 | WP_235079469.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| LZ586_RS08385 (LZ586_08425) | 1785097..1785489 | + | 393 | WP_235079471.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| LZ586_RS08390 (LZ586_08430) | 1785586..1785876 | + | 291 | WP_235079472.1 | hypothetical protein | - |
| LZ586_RS08395 (LZ586_08435) | 1785886..1787583 | - | 1698 | WP_235079473.1 | hypothetical protein | - |
| LZ586_RS08400 (LZ586_08440) | 1787923..1788228 | - | 306 | WP_235079475.1 | hypothetical protein | - |
| LZ586_RS08405 (LZ586_08445) | 1788257..1788583 | - | 327 | WP_235079477.1 | hypothetical protein | - |
| LZ586_RS08410 (LZ586_08450) | 1788477..1788875 | - | 399 | WP_235079478.1 | hypothetical protein | - |
| LZ586_RS08415 (LZ586_08455) | 1788872..1789435 | - | 564 | WP_235079479.1 | lysozyme | - |
| LZ586_RS08420 (LZ586_08460) | 1789419..1789694 | - | 276 | WP_235079481.1 | hypothetical protein | - |
| LZ586_RS08425 (LZ586_08465) | 1789719..1789994 | - | 276 | WP_235079483.1 | hypothetical protein | - |
| LZ586_RS08430 (LZ586_08470) | 1789991..1790278 | - | 288 | WP_235079484.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1781063..1835372 | 54309 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 62 a.a. Molecular weight: 6844.90 Da Isoelectric Point: 10.9310
>T232217 WP_235079469.1 NZ_CP090953:1784866-1785051 [Sphingomonas sp. S2-65]
MKSREVIKKIEAEGWYEVRQTGSHKHFRHPTRPGTATVPHPKSDLPIGTLKSISKQTGVPL
MKSREVIKKIEAEGWYEVRQTGSHKHFRHPTRPGTATVPHPKSDLPIGTLKSISKQTGVPL
Download Length: 186 bp
>T232217 NZ_CP127274:c2178907-2178578 [Mycobacterium tuberculosis]
GTGACCGCACTTCCGGCGCGCGGAGAGGTGTGGTGGTGTGAGATGGCTGAGATCGGTCGGCGACCAGTCGTCGTGCTGTC
GCGCGATGCCGCGATCCCTCGGCTGCGACGCGCACTTGTCGCGCCCTGCACCACGACCATCCGAGGGCTAGCCAGTGAGG
TTGTTCTTGAACCCGGTTCCGACCCGATCCCGCGCCGTTCCGCGGTGAATTTGGACTCAGTCGAAAGTGTCTCGGTCGCG
GTATTGGTGAATCGGCTTGGCCGCCTCGCCGACATCCGGATGCGCGCCATCTGCACGGCCCTCGAGGTCGCCGTCGATTG
CTCTCGATGA
GTGACCGCACTTCCGGCGCGCGGAGAGGTGTGGTGGTGTGAGATGGCTGAGATCGGTCGGCGACCAGTCGTCGTGCTGTC
GCGCGATGCCGCGATCCCTCGGCTGCGACGCGCACTTGTCGCGCCCTGCACCACGACCATCCGAGGGCTAGCCAGTGAGG
TTGTTCTTGAACCCGGTTCCGACCCGATCCCGCGCCGTTCCGCGGTGAATTTGGACTCAGTCGAAAGTGTCTCGGTCGCG
GTATTGGTGAATCGGCTTGGCCGCCTCGCCGACATCCGGATGCGCGCCATCTGCACGGCCCTCGAGGTCGCCGTCGATTG
CTCTCGATGA
Antitoxin
Download Length: 131 a.a. Molecular weight: 13569.39 Da Isoelectric Point: 4.5486
>AT232217 WP_235079471.1 NZ_CP090953:1785097-1785489 [Sphingomonas sp. S2-65]
MATAYYPAIIERGPEGFGVYFPDLPGCVSAGRTVTEAALGAEEALHGHLAVMAEHGDAIPEASAVDEVEAFEGSEEVARI
LVRGERPGKAVRVQISIEEGLLARIDRVAANRSRFLAEAAAAKLAAVAAI
MATAYYPAIIERGPEGFGVYFPDLPGCVSAGRTVTEAALGAEEALHGHLAVMAEHGDAIPEASAVDEVEAFEGSEEVARI
LVRGERPGKAVRVQISIEEGLLARIDRVAANRSRFLAEAAAAKLAAVAAI
Download Length: 393 bp
>AT232217 NZ_CP127274:c2179281-2178904 [Mycobacterium tuberculosis]
GTGAAGACGGCCCGGTTGCAGGTGACGTTGCGCTGCGCGGTAGACCTCATCAATTCGTCCAGCGACCAATGTTTCGCCCG
TATCGAGCACGTTGCGTCCGATCAGGCGGATCCACGCCCCGGAGTGTGGCATAGTAGTGGCATGAATCGCATACGGCTGA
GCACTACTGTCGACGCCGCACTCTTGACAAGTGCGCGCGACATGCGGGCAGGAATCACTGACGCAGCCCTCATCGATGAG
GCCCTTGCGGCATTACTGGCTCGTCATCGATCGGCCGAGGTGGATGCCAGCTATGCGGCCTACGACAAGCACCCGGTCGA
TGAGCCCGACGAGTGGGGCGATCTAGCGTCGTGGCGGCGGGCGGCTGGAGACTCGTGA
GTGAAGACGGCCCGGTTGCAGGTGACGTTGCGCTGCGCGGTAGACCTCATCAATTCGTCCAGCGACCAATGTTTCGCCCG
TATCGAGCACGTTGCGTCCGATCAGGCGGATCCACGCCCCGGAGTGTGGCATAGTAGTGGCATGAATCGCATACGGCTGA
GCACTACTGTCGACGCCGCACTCTTGACAAGTGCGCGCGACATGCGGGCAGGAATCACTGACGCAGCCCTCATCGATGAG
GCCCTTGCGGCATTACTGGCTCGTCATCGATCGGCCGAGGTGGATGCCAGCTATGCGGCCTACGACAAGCACCCGGTCGA
TGAGCCCGACGAGTGGGGCGATCTAGCGTCGTGGCGGCGGGCGGCTGGAGACTCGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|