Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 102617..103143 | Replicon | plasmid pM1 |
| Accession | NZ_CP090910 | ||
| Organism | Enterobacter hormaechei strain M1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | L1E13_RS22690 | Protein ID | WP_000323025.1 |
| Coordinates | 102856..103143 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | J5W3H0 |
| Locus tag | L1E13_RS22685 | Protein ID | WP_004196370.1 |
| Coordinates | 102617..102856 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1E13_RS22660 (L1E13_22660) | 98206..98862 | - | 657 | WP_001516695.1 | quinolone resistance pentapeptide repeat protein QnrS1 | - |
| L1E13_RS22665 (L1E13_22665) | 99257..100410 | + | 1154 | Protein_107 | IS3 family transposase | - |
| L1E13_RS22670 (L1E13_22670) | 100459..101157 | - | 699 | Protein_108 | class A beta-lactamase | - |
| L1E13_RS22680 (L1E13_22680) | 102494..102592 | - | 99 | Protein_110 | protein YdfV | - |
| L1E13_RS22685 (L1E13_22685) | 102617..102856 | + | 240 | WP_004196370.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| L1E13_RS22690 (L1E13_22690) | 102856..103143 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| L1E13_RS22695 (L1E13_22695) | 103210..104244 | - | 1035 | Protein_113 | IS481 family transposase | - |
| L1E13_RS22700 (L1E13_22700) | 104316..104474 | + | 159 | WP_013087178.1 | type I toxin-antitoxin system Hok family toxin | - |
| L1E13_RS22705 (L1E13_22705) | 105350..105664 | + | 315 | WP_044157807.1 | hypothetical protein | - |
| L1E13_RS22710 (L1E13_22710) | 105725..106186 | + | 462 | WP_013087181.1 | hypothetical protein | - |
| L1E13_RS22715 (L1E13_22715) | 106274..106474 | + | 201 | WP_013087182.1 | hypothetical protein | - |
| L1E13_RS22720 (L1E13_22720) | 106515..107306 | + | 792 | WP_013087183.1 | N-6 DNA methylase | - |
| L1E13_RS22725 (L1E13_22725) | 107348..107683 | + | 336 | WP_013087184.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | catA2 / tet(D) / dfrA14 / sul2 / aph(3'')-Ib / aph(6)-Id / qnrS1 / blaLAP-2 | - | 1..148434 | 148434 | |
| - | inside | IScluster/Tn | catA2 / tet(D) / dfrA14 / sul2 / aph(3'')-Ib / aph(6)-Id / qnrS1 / blaLAP-2 | - | 71412..104244 | 32832 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T232124 WP_000323025.1 NZ_CP090910:102856-103143 [Enterobacter hormaechei]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T232124 NZ_CP127256:5284-5559 [Escherichia coli]
ATGGAACTGAAGTGGACCAGTAAGGCGCTTTCTGATTTGGCGCGGTTATATGATTTTCTGGTGCTGGCCAGTAAACCTGC
TGCCGCCAGAACGGTACAGTCCCTGACACAGGCACCGGTCATTCTGTTAACTCATCCACGTATGGGAGAACAGTTGTTTC
AGTTTGAACCCAGGGAGGTCAGACGGATTTTTGCTGGCGAGTACGAAATCCGTTACGAACTTAATGGCCAGACTATTTAT
GTATTGCGCCTGTGGCACACACGAGAAAACAGGTAG
ATGGAACTGAAGTGGACCAGTAAGGCGCTTTCTGATTTGGCGCGGTTATATGATTTTCTGGTGCTGGCCAGTAAACCTGC
TGCCGCCAGAACGGTACAGTCCCTGACACAGGCACCGGTCATTCTGTTAACTCATCCACGTATGGGAGAACAGTTGTTTC
AGTTTGAACCCAGGGAGGTCAGACGGATTTTTGCTGGCGAGTACGAAATCCGTTACGAACTTAATGGCCAGACTATTTAT
GTATTGCGCCTGTGGCACACACGAGAAAACAGGTAG
Antitoxin
Download Length: 80 a.a. Molecular weight: 9018.43 Da Isoelectric Point: 4.3894
>AT232124 WP_004196370.1 NZ_CP090910:102617-102856 [Enterobacter hormaechei]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLCNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLCNPKPVRVTLDEL
Download Length: 240 bp
>AT232124 NZ_CP127256:5006-5284 [Escherichia coli]
ATGAAAAACAATACCGCACAAGCAACAAAAGTAATTACCGCGCATGTGCCATTACCTATGGCTGATAAAGTCGACCAGAT
AGCCGCCAGACTGGAACGCTCCCGGGGCTGGATTATCAAACAGGCGCTTTCTGCATGGCTTGCCCAGGAGGAGGAGCGTA
ATCGCCTGACGCTGGAAGCCCTGGACGATGTGACATCCGGACAGATTATCGACCATCAGGCTGTACAGGCCTGGGCGGAC
AGCCTCAGTACTGACAATCCGTTACCGGTGCCACGCTGA
ATGAAAAACAATACCGCACAAGCAACAAAAGTAATTACCGCGCATGTGCCATTACCTATGGCTGATAAAGTCGACCAGAT
AGCCGCCAGACTGGAACGCTCCCGGGGCTGGATTATCAAACAGGCGCTTTCTGCATGGCTTGCCCAGGAGGAGGAGCGTA
ATCGCCTGACGCTGGAAGCCCTGGACGATGTGACATCCGGACAGATTATCGACCATCAGGCTGTACAGGCCTGGGCGGAC
AGCCTCAGTACTGACAATCCGTTACCGGTGCCACGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|