Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 881881..882084 | Replicon | chromosome |
| Accession | NZ_CP090909 | ||
| Organism | Enterobacter hormaechei strain M1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 881888..881991 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 881881..882084 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1E13_RS04270 (L1E13_04270) | 876973..877632 | + | 660 | WP_234979246.1 | MT-A70 family methyltransferase | - |
| L1E13_RS04275 (L1E13_04275) | 877629..878399 | + | 771 | WP_234979247.1 | dcm methylase | - |
| L1E13_RS04280 (L1E13_04280) | 878396..878614 | + | 219 | WP_234979248.1 | hypothetical protein | - |
| L1E13_RS04285 (L1E13_04285) | 878611..879222 | + | 612 | WP_234979249.1 | hypothetical protein | - |
| L1E13_RS04290 (L1E13_04290) | 879219..879410 | + | 192 | WP_234979250.1 | DUF1382 family protein | - |
| L1E13_RS04295 (L1E13_04295) | 879502..879723 | + | 222 | WP_234979251.1 | TraR/DksA family transcriptional regulator | - |
| L1E13_RS04300 (L1E13_04300) | 879885..880130 | + | 246 | WP_234979252.1 | hypothetical protein | - |
| L1E13_RS04305 (L1E13_04305) | 880484..880756 | + | 273 | WP_023300430.1 | excisionase | - |
| L1E13_RS04310 (L1E13_04310) | 880725..881810 | + | 1086 | WP_234979253.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 881881..882084 | + | 204 | - | - | Antitoxin |
| - | 881888..881991 | - | 104 | - | - | Toxin |
| L1E13_RS04315 (L1E13_04315) | 882133..882471 | - | 339 | WP_003859787.1 | YebY family protein | - |
| L1E13_RS04320 (L1E13_04320) | 882488..883357 | - | 870 | WP_234979254.1 | copper homeostasis membrane protein CopD | - |
| L1E13_RS04325 (L1E13_04325) | 883359..883730 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| L1E13_RS04330 (L1E13_04330) | 883868..884098 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| L1E13_RS04335 (L1E13_04335) | 884210..884860 | + | 651 | WP_045350792.1 | carbon-nitrogen hydrolase family protein | - |
| L1E13_RS04340 (L1E13_04340) | 884885..885547 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 824517..887604 | 63087 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T232108 NZ_CP090909:c881991-881888 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT232108 NZ_CP090909:881881-882084 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
