Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2028724..2028864 | Replicon | chromosome |
| Accession | NZ_CP090908 | ||
| Organism | Serratia marcescens strain Sys06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2028768..2028864 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2028724..2028864 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1F17_RS09660 (L1F17_09660) | 2023992..2024387 | + | 396 | WP_004928846.1 | RidA family protein | - |
| L1F17_RS09665 (L1F17_09665) | 2024544..2025497 | + | 954 | WP_060560424.1 | prolyl aminopeptidase | - |
| L1F17_RS09670 (L1F17_09670) | 2025529..2025759 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| L1F17_RS09675 (L1F17_09675) | 2026104..2026622 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| L1F17_RS09680 (L1F17_09680) | 2026915..2027331 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| L1F17_RS09685 (L1F17_09685) | 2027334..2028215 | + | 882 | WP_048322945.1 | copper homeostasis membrane protein CopD | - |
| L1F17_RS09690 (L1F17_09690) | 2028285..2028626 | + | 342 | WP_060559223.1 | YebY family protein | - |
| - | 2028724..2028864 | - | 141 | - | - | Antitoxin |
| - | 2028768..2028864 | + | 97 | - | - | Toxin |
| L1F17_RS09695 (L1F17_09695) | 2028943..2030025 | - | 1083 | WP_084969851.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| L1F17_RS09700 (L1F17_09700) | 2030000..2030275 | - | 276 | WP_015377485.1 | excisionase | - |
| L1F17_RS09705 (L1F17_09705) | 2030351..2031418 | - | 1068 | WP_084969850.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2020706..2074552 | 53846 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T232090 NZ_CP090908:2028768-2028864 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT232090 NZ_CP090908:c2028864-2028724 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
