Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2094139..2094410 | Replicon | chromosome |
| Accession | NC_011415 | ||
| Organism | Escherichia coli SE11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2094177..2094280 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2094139..2094410 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECSE_RS10405 | 2091296..2092735 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECSE_RS10410 | 2092853..2093089 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECSE_RS10415 | 2093194..2093385 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECSE_RS10420 | 2093386..2094042 | - | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| - | 2094139..2094410 | + | 272 | - | - | Antitoxin |
| - | 2094177..2094280 | - | 104 | - | - | Toxin |
| ECSE_RS10430 | 2094438..2094779 | - | 342 | WP_000976472.1 | YebY family protein | - |
| ECSE_RS10435 | 2094792..2095664 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| ECSE_RS10440 | 2095668..2096042 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| ECSE_RS10445 | 2096181..2096411 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECSE_RS10450 | 2096513..2097169 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECSE_RS10455 | 2097193..2097855 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T23207 NC_011415:c2094280-2094177 [Escherichia coli SE11]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT23207 NC_011415:2094139-2094410 [Escherichia coli SE11]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
