Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2593893..2594038 | Replicon | chromosome |
| Accession | NZ_CP090834 | ||
| Organism | Klebsiella pneumoniae strain K-28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2593929..2594031 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2593893..2594038 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0U94_RS12685 (L0U94_12665) | 2589023..2591083 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| L0U94_RS12690 (L0U94_12670) | 2591087..2591746 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| L0U94_RS12695 (L0U94_12675) | 2591825..2592055 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L0U94_RS12700 (L0U94_12680) | 2592168..2592542 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| L0U94_RS12705 (L0U94_12685) | 2592546..2593415 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| L0U94_RS12710 (L0U94_12690) | 2593432..2593770 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2593893..2594038 | - | 146 | - | - | Antitoxin |
| - | 2593929..2594031 | + | 103 | - | - | Toxin |
| L0U94_RS12715 (L0U94_12695) | 2594406..2594549 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| L0U94_RS12720 (L0U94_12700) | 2594654..2595622 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| L0U94_RS12725 (L0U94_12705) | 2595779..2596432 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| L0U94_RS12730 (L0U94_12710) | 2596429..2596620 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L0U94_RS12735 (L0U94_12715) | 2596718..2596957 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L0U94_RS12740 (L0U94_12720) | 2597073..2598506 | - | 1434 | WP_256613120.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T231936 NZ_CP090834:2593929-2594031 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT231936 NZ_CP090834:c2594038-2593893 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
