Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2718328..2718527 | Replicon | chromosome |
| Accession | NZ_CP090796 | ||
| Organism | Enterobacter hormaechei strain Y-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2718331..2718434 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2718328..2718527 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0Y15_RS12865 (L0Y15_12865) | 2714592..2716034 | + | 1443 | WP_072199618.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L0Y15_RS12870 (L0Y15_12870) | 2716141..2716380 | + | 240 | WP_003859885.1 | YebV family protein | - |
| L0Y15_RS12875 (L0Y15_12875) | 2716415..2717059 | - | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| L0Y15_RS12880 (L0Y15_12880) | 2717227..2718207 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| L0Y15_RS12885 (L0Y15_12885) | 2718253..2718450 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2718328..2718527 | + | 200 | - | - | Antitoxin |
| - | 2718331..2718434 | - | 104 | - | - | Toxin |
| L0Y15_RS12890 (L0Y15_12890) | 2718576..2718914 | - | 339 | WP_003859787.1 | YebY family protein | - |
| L0Y15_RS12895 (L0Y15_12895) | 2718931..2719800 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| L0Y15_RS12900 (L0Y15_12900) | 2719802..2720173 | - | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| L0Y15_RS12905 (L0Y15_12905) | 2720311..2720541 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| L0Y15_RS12910 (L0Y15_12910) | 2720653..2721303 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| L0Y15_RS12915 (L0Y15_12915) | 2721328..2721990 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2701674..2782583 | 80909 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T231919 NZ_CP090796:c2718434-2718331 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT231919 NZ_CP090796:2718328-2718527 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
