Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2867412..2867613 | Replicon | chromosome |
| Accession | NZ_CP090792 | ||
| Organism | Enterobacter hormaechei strain FY-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2867417..2867520 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2867412..2867613 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0Y16_RS13735 (L0Y16_13735) | 2863673..2865121 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L0Y16_RS13740 (L0Y16_13740) | 2865227..2865466 | + | 240 | WP_003859885.1 | YebV family protein | - |
| L0Y16_RS13745 (L0Y16_13745) | 2865501..2866145 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| L0Y16_RS13750 (L0Y16_13750) | 2866313..2867293 | + | 981 | WP_032653972.1 | VirK/YbjX family protein | - |
| L0Y16_RS13755 (L0Y16_13755) | 2867339..2867536 | + | 198 | WP_032653975.1 | hypothetical protein | - |
| - | 2867412..2867613 | + | 202 | - | - | Antitoxin |
| - | 2867417..2867520 | - | 104 | - | - | Toxin |
| L0Y16_RS13760 (L0Y16_13760) | 2867662..2868000 | - | 339 | WP_003859787.1 | YebY family protein | - |
| L0Y16_RS13765 (L0Y16_13765) | 2868017..2868886 | - | 870 | WP_032653979.1 | copper homeostasis membrane protein CopD | - |
| L0Y16_RS13770 (L0Y16_13770) | 2868888..2869259 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| L0Y16_RS13775 (L0Y16_13775) | 2869397..2869627 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| L0Y16_RS13780 (L0Y16_13780) | 2869739..2870389 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| L0Y16_RS13785 (L0Y16_13785) | 2870414..2871076 | + | 663 | WP_032653982.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T231900 NZ_CP090792:c2867520-2867417 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT231900 NZ_CP090792:2867412-2867613 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
