Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapC-vagC/VapC-VagC
Location 77499..78136 Replicon chromosome
Accession NZ_CP090714
Organism Burkholderia multivorans strain 2015Y70629342III

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag L0Z12_RS00340 Protein ID WP_053296685.1
Coordinates 77735..78136 (+) Length 134 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID A0A132EWB1
Locus tag L0Z12_RS00335 Protein ID WP_006408845.1
Coordinates 77499..77735 (+) Length 79 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
L0Z12_RS00315 (L0Z12_00315) 72661..73203 + 543 WP_088923753.1 hypothetical protein -
L0Z12_RS00320 (L0Z12_00320) 73374..74405 + 1032 WP_105751888.1 helix-turn-helix domain-containing protein -
L0Z12_RS00325 (L0Z12_00325) 74524..75612 - 1089 WP_105751887.1 ADP-heptose--LPS heptosyltransferase -
L0Z12_RS00330 (L0Z12_00330) 75609..77312 - 1704 WP_105751886.1 thiamine pyrophosphate-binding protein -
L0Z12_RS00335 (L0Z12_00335) 77499..77735 + 237 WP_006408845.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
L0Z12_RS00340 (L0Z12_00340) 77735..78136 + 402 WP_053296685.1 type II toxin-antitoxin system VapC family toxin Toxin
L0Z12_RS00345 (L0Z12_00345) 78258..79646 - 1389 WP_006408285.1 L-serine ammonia-lyase -
L0Z12_RS00350 (L0Z12_00350) 79673..80815 - 1143 WP_070555436.1 alginate lyase family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(4-121)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 134 a.a.        Molecular weight: 14963.17 Da        Isoelectric Point: 5.7429

>T231693 WP_053296685.1 NZ_CP090714:77735-78136 [Burkholderia multivorans]
MPRYMLDTNMCIYLMKNQPEQVARRFAQCYTGDVVMSAITYAELEYGVTLCANPARERRNLAALIEDIPVAPFDGAAAQA
YGPIREATRERKKDHLDKLIGAHAVSLDVVLVTNNERDFASYPGLRLENWLIG

Download         Length: 402 bp

>T231693 NZ_CP126943:86493-86909 [Escherichia coli O1:K1:H7]
GTGAACAAGATCTATATGCTCGACACGAACATCTGCTCGTTCATCATGCGCGAGCAGCCTGAAGCAGTGCTTAAGAATCT
GGAGCAGGCGGTGCTGCGCGGTCACCGTATCGTGGTCTCGGCCATCACCTACTCCGAGATGCGCTTCGGCGCCACCGGTC
CAAAGGCATCGCCACGCCACGTGCAGCTGGTTGACGCGTTCTGCGCCCGTCTCGATGCCATCCTGCCCTGGGATCGCGCT
GCGGTGGATGCAACCACGGAGGTTAAGGTGGCGCTGCGCCTCGCCGGCACGCCGATCGGTCCAAACGACACGGCGATCGC
CGGGCACGCCATCGCCACCGGGGCAATACTGGTGACGAATAATGTGAGAGAGTTTGAGCGGGTGCCTGGACTGGTACTGG
AAGACTGGGCAGGATAA

Antitoxin


Download         Length: 79 a.a.        Molecular weight: 8915.00 Da        Isoelectric Point: 5.8651

>AT231693 WP_006408845.1 NZ_CP090714:77499-77735 [Burkholderia multivorans]
MHTTRVFRNGNSQAVRIPADLAYERSDIELEIERVGDEIRIRPARRPLTGVLGKFAKFGPDFMAEGRGDQEQAEREGW

Download         Length: 237 bp

>AT231693 NZ_CP126943:86266-86496 [Escherichia coli O1:K1:H7]
ATGAGAACCGTATCTATTTTCAAAAATGGCAATAACCGCGCGATCCGTCTGCCCCGCGATCTGGATTTTGAGGGGGTGAG
TGAGCTGGAGATTGTACGGGAAGGGGACAGAATCATTCTGCGTCCCCTCCGCCCGAGCTGGAGCTCATTCCTGGAGCTAG
AAAAGGCCGATCCGGGCTTTATGACGGAACGCGAGGACGTTGTCTGCGACGAAGGACGATTTAACCTGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB A0A132EWB1

References