Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/LOTUS_5_Limkain_b1(toxin) |
| Location | 2238258..2238835 | Replicon | chromosome |
| Accession | NZ_CP090698 | ||
| Organism | Burkholderia cepacia strain 2017Y70952565VI | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | A0A8I1DRR3 |
| Locus tag | L0Z01_RS09835 | Protein ID | WP_048026025.1 |
| Coordinates | 2238470..2238835 (+) | Length | 122 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | A0A8B2Q139 |
| Locus tag | L0Z01_RS09830 | Protein ID | WP_048026026.1 |
| Coordinates | 2238258..2238476 (+) | Length | 73 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0Z01_RS09805 (L0Z01_09805) | 2233472..2233954 | + | 483 | WP_249453701.1 | GNAT family N-acetyltransferase | - |
| L0Z01_RS09810 (L0Z01_09810) | 2234050..2235315 | - | 1266 | WP_048026028.1 | Zn-dependent hydrolase | - |
| L0Z01_RS09815 (L0Z01_09815) | 2235308..2235832 | - | 525 | WP_021160901.1 | L-2-amino-thiazoline-4-carboxylic acid hydrolase | - |
| L0Z01_RS09820 (L0Z01_09820) | 2235892..2237058 | - | 1167 | WP_027791290.1 | branched-chain amino acid ABC transporter substrate-binding protein | - |
| L0Z01_RS09825 (L0Z01_09825) | 2237236..2238132 | + | 897 | WP_048026027.1 | LysR substrate-binding domain-containing protein | - |
| L0Z01_RS09830 (L0Z01_09830) | 2238258..2238476 | + | 219 | WP_048026026.1 | ribbon-helix-helix protein, CopG family | Antitoxin |
| L0Z01_RS09835 (L0Z01_09835) | 2238470..2238835 | + | 366 | WP_048026025.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| L0Z01_RS09840 (L0Z01_09840) | 2239201..2239764 | + | 564 | WP_006488685.1 | alkyl hydroperoxide reductase subunit C | - |
| L0Z01_RS09845 (L0Z01_09845) | 2239893..2241491 | + | 1599 | WP_182670402.1 | alkyl hydroperoxide reductase subunit F | - |
| L0Z01_RS09850 (L0Z01_09850) | 2241670..2242224 | - | 555 | WP_230945234.1 | DUF4276 family protein | - |
| L0Z01_RS09855 (L0Z01_09855) | 2242260..2243447 | - | 1188 | WP_081057995.1 | AAA family ATPase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 122 a.a. Molecular weight: 13610.67 Da Isoelectric Point: 8.4826
>T231661 WP_048026025.1 NZ_CP090698:2238470-2238835 [Burkholderia cepacia]
MVKALFDTNILIDYLGGVESARVELARYSYRAISIISWMEVLVGTSAHDENTTRAWLSSFDVIALDSTIANRAVTIRQER
RIRLPDAIVWASAQVNGLLLVSRNTKDFPATEPGIRMPYRI
MVKALFDTNILIDYLGGVESARVELARYSYRAISIISWMEVLVGTSAHDENTTRAWLSSFDVIALDSTIANRAVTIRQER
RIRLPDAIVWASAQVNGLLLVSRNTKDFPATEPGIRMPYRI
Download Length: 366 bp
>T231661 NZ_CP126940:c4729695-4729147 [Escherichia coli O2:K1:H7]
ATGTCTCACAATTCAGATATCTATAAACTTATCGGAGCGGCCGCAGGTGTTGAAAATGGTCGCTCTGAAGCATCCTTAAA
CTCTACTGACAGTCAAGAACAGATTTTTAAATCTGCATTTGAGCCGTCTAATCATGAGAGCGACGATGATTCTTCTTCAG
AAAATAAAGCTATTCTGGAGGCAGAAGAGTTTGGTTCTAATACTGGTGCATTGCATGAGTTTATGCAGCAGAACAGAATG
GACAGTCTTCAAGCTCAGCTTGATATGCTCAAATCACAAGTACGGGATAAGATAGCTGACGCAACTGGTAAAGAAATAGA
CAATGAGCTTCGGACAAAAATGGCCTCATTCACGGTTTGGTTTATGTCGTGTTGGTGCTTATTCGTTGTCGCAATGTTTA
CATCGTTTCTTATTGCACATGAAGGAAAGCCTCCAGTTGAAGCGATCGTTGCATTACTAGGTACAAGTACAATTAGTATT
GTTGGTTTGGTTGGTTTCGTTGTTAGTGGATTGTTCAAATCAAGAAAAGATAGTGATAAAGAAAAATAA
ATGTCTCACAATTCAGATATCTATAAACTTATCGGAGCGGCCGCAGGTGTTGAAAATGGTCGCTCTGAAGCATCCTTAAA
CTCTACTGACAGTCAAGAACAGATTTTTAAATCTGCATTTGAGCCGTCTAATCATGAGAGCGACGATGATTCTTCTTCAG
AAAATAAAGCTATTCTGGAGGCAGAAGAGTTTGGTTCTAATACTGGTGCATTGCATGAGTTTATGCAGCAGAACAGAATG
GACAGTCTTCAAGCTCAGCTTGATATGCTCAAATCACAAGTACGGGATAAGATAGCTGACGCAACTGGTAAAGAAATAGA
CAATGAGCTTCGGACAAAAATGGCCTCATTCACGGTTTGGTTTATGTCGTGTTGGTGCTTATTCGTTGTCGCAATGTTTA
CATCGTTTCTTATTGCACATGAAGGAAAGCCTCCAGTTGAAGCGATCGTTGCATTACTAGGTACAAGTACAATTAGTATT
GTTGGTTTGGTTGGTTTCGTTGTTAGTGGATTGTTCAAATCAAGAAAAGATAGTGATAAAGAAAAATAA
Antitoxin
Download Length: 73 a.a. Molecular weight: 8257.35 Da Isoelectric Point: 4.4419
>AT231661 WP_048026026.1 NZ_CP090698:2238258-2238476 [Burkholderia cepacia]
MSRILVDLSDGQLDELAAIVETERRPRAAIIRDAIDAYIALHKRPLADDAFGLWKDRTVDGLAYQEEMRSEW
MSRILVDLSDGQLDELAAIVETERRPRAAIIRDAIDAYIALHKRPLADDAFGLWKDRTVDGLAYQEEMRSEW
Download Length: 219 bp
>AT231661 NZ_CP126940:c4730191-4729718 [Escherichia coli O2:K1:H7]
ATGTACAGCCCGGTACAAATAGCCAATAAATTCATAACGTTGGGAAACCAACATCATAATCCTCTGACCCACATGCAACT
GCAGAAGCTTACTTATATTGCACATGGTTACTATTTAGCATTAACAGGTAAGCCTTTGCTCAATGAATGTGTCTCCGCGT
GGAAGTACGGTCCAGTTATTCCTGGAATGTACGATGCTTTCAAAGATTATGGGAATAAACCTGTTACGAATGTAGCAGTA
GCTCCTTTTGGTGGCATTGTTACTATGGATCCACAAGCAGAGAGCATTATAGGGGCTGTTTATAAATTTTACGGCTCGAA
AAATGGAATTGAGTTATCAACTCTAACTCATATGCCTGGTACGCCTTGGTCACAAGCTTATAATGGTATTGGCTCGTCAA
TCATCTCAAATGATGCGATCAAGGCTTATTATCATGATTTATTGAATAACCGACAGCAATGTCAGGGCCTCTGA
ATGTACAGCCCGGTACAAATAGCCAATAAATTCATAACGTTGGGAAACCAACATCATAATCCTCTGACCCACATGCAACT
GCAGAAGCTTACTTATATTGCACATGGTTACTATTTAGCATTAACAGGTAAGCCTTTGCTCAATGAATGTGTCTCCGCGT
GGAAGTACGGTCCAGTTATTCCTGGAATGTACGATGCTTTCAAAGATTATGGGAATAAACCTGTTACGAATGTAGCAGTA
GCTCCTTTTGGTGGCATTGTTACTATGGATCCACAAGCAGAGAGCATTATAGGGGCTGTTTATAAATTTTACGGCTCGAA
AAATGGAATTGAGTTATCAACTCTAACTCATATGCCTGGTACGCCTTGGTCACAAGCTTATAATGGTATTGGCTCGTCAA
TCATCTCAAATGATGCGATCAAGGCTTATTATCATGATTTATTGAATAACCGACAGCAATGTCAGGGCCTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|