Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1994189..1994334 | Replicon | chromosome |
| Accession | NZ_CP090629 | ||
| Organism | Klebsiella pneumoniae isolate KpBO_TO1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1994225..1994327 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1994189..1994334 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0105_RS09865 (L0105_09865) | 1989319..1991379 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| L0105_RS09870 (L0105_09870) | 1991383..1992042 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| L0105_RS09875 (L0105_09875) | 1992121..1992351 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L0105_RS09880 (L0105_09880) | 1992464..1992838 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| L0105_RS09885 (L0105_09885) | 1992842..1993711 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| L0105_RS09890 (L0105_09890) | 1993728..1994066 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1994189..1994334 | - | 146 | - | - | Antitoxin |
| - | 1994225..1994327 | + | 103 | - | - | Toxin |
| L0105_RS09895 (L0105_09895) | 1994702..1994845 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| L0105_RS09900 (L0105_09900) | 1994950..1995918 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| L0105_RS09905 (L0105_09905) | 1996075..1996728 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| L0105_RS09910 (L0105_09910) | 1996725..1996916 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L0105_RS09915 (L0105_09915) | 1997014..1997253 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L0105_RS09920 (L0105_09920) | 1997369..1998802 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T231511 NZ_CP090629:1994225-1994327 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT231511 NZ_CP090629:c1994334-1994189 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
