Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1994188..1994333 | Replicon | chromosome |
| Accession | NZ_CP090626 | ||
| Organism | Klebsiella pneumoniae isolate KpBO_TO3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1994224..1994326 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1994188..1994333 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0104_RS09865 (L0104_09865) | 1989318..1991378 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| L0104_RS09870 (L0104_09870) | 1991382..1992041 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| L0104_RS09875 (L0104_09875) | 1992120..1992350 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L0104_RS09880 (L0104_09880) | 1992463..1992837 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| L0104_RS09885 (L0104_09885) | 1992841..1993710 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| L0104_RS09890 (L0104_09890) | 1993727..1994065 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1994188..1994333 | - | 146 | - | - | Antitoxin |
| - | 1994224..1994326 | + | 103 | - | - | Toxin |
| L0104_RS09895 (L0104_09895) | 1994701..1994844 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| L0104_RS09900 (L0104_09900) | 1994949..1995917 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| L0104_RS09905 (L0104_09905) | 1996074..1996727 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| L0104_RS09910 (L0104_09910) | 1996724..1996915 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L0104_RS09915 (L0104_09915) | 1997013..1997252 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L0104_RS09920 (L0104_09920) | 1997368..1998801 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T231492 NZ_CP090626:1994224-1994326 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT231492 NZ_CP090626:c1994333-1994188 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
