Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995492..1995637 | Replicon | chromosome |
| Accession | NZ_CP090623 | ||
| Organism | Klebsiella pneumoniae isolate KpBO_TO5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995528..1995630 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995492..1995637 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0103_RS09870 (L0103_09870) | 1990622..1992682 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| L0103_RS09875 (L0103_09875) | 1992686..1993345 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| L0103_RS09880 (L0103_09880) | 1993424..1993654 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L0103_RS09885 (L0103_09885) | 1993767..1994141 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| L0103_RS09890 (L0103_09890) | 1994145..1995014 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| L0103_RS09895 (L0103_09895) | 1995031..1995369 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1995492..1995637 | - | 146 | - | - | Antitoxin |
| - | 1995528..1995630 | + | 103 | - | - | Toxin |
| L0103_RS09900 (L0103_09900) | 1996005..1996148 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| L0103_RS09905 (L0103_09905) | 1996253..1997221 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| L0103_RS09910 (L0103_09910) | 1997378..1998031 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| L0103_RS09915 (L0103_09915) | 1998028..1998219 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L0103_RS09920 (L0103_09920) | 1998317..1998556 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L0103_RS09925 (L0103_09925) | 1998672..2000105 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T231473 NZ_CP090623:1995528-1995630 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT231473 NZ_CP090623:c1995637-1995492 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
