Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1959505..1959650 | Replicon | chromosome |
| Accession | NZ_CP090622 | ||
| Organism | Klebsiella pneumoniae strain KP19-3138 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1959541..1959643 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1959505..1959650 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXT11_RS12140 | 1954635..1956695 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LXT11_RS12145 | 1956699..1957358 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| LXT11_RS12150 | 1957437..1957667 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LXT11_RS12155 | 1957780..1958154 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LXT11_RS12160 | 1958158..1959027 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LXT11_RS12165 | 1959044..1959382 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1959505..1959650 | - | 146 | - | - | Antitoxin |
| - | 1959541..1959643 | + | 103 | - | - | Toxin |
| LXT11_RS12170 | 1960019..1960162 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LXT11_RS12175 | 1960267..1961235 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LXT11_RS12180 | 1961392..1962045 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| LXT11_RS12185 | 1962042..1962233 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LXT11_RS12190 | 1962331..1962570 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LXT11_RS12195 | 1962686..1964119 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T231455 NZ_CP090622:1959541-1959643 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT231455 NZ_CP090622:c1959650-1959505 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
