Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | cptAB/Cpta(toxin) |
Location | 3972176..3972836 | Replicon | chromosome |
Accession | NZ_CP090591 | ||
Organism | Pectobacterium aroidearum strain QJ313 |
Toxin (Protein)
Gene name | cptA | Uniprot ID | - |
Locus tag | L0Y30_RS17705 | Protein ID | WP_043881709.1 |
Coordinates | 3972176..3972550 (-) | Length | 125 a.a. |
Antitoxin (Protein)
Gene name | cptB | Uniprot ID | C6D8Y5 |
Locus tag | L0Y30_RS17710 | Protein ID | WP_012773340.1 |
Coordinates | 3972570..3972836 (-) | Length | 89 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
L0Y30_RS17680 (L0Y30_17655) | 3967553..3968452 | - | 900 | WP_012773347.1 | site-specific tyrosine recombinase XerD | - |
L0Y30_RS17685 (L0Y30_17660) | 3968764..3970092 | + | 1329 | WP_181845156.1 | MFS transporter | - |
L0Y30_RS17690 (L0Y30_17665) | 3970255..3970773 | + | 519 | WP_012773344.1 | flavodoxin FldB | - |
L0Y30_RS17695 (L0Y30_17670) | 3970802..3971125 | + | 324 | WP_180777498.1 | hypothetical protein | - |
L0Y30_RS17700 (L0Y30_17675) | 3971171..3972106 | - | 936 | WP_256542328.1 | 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF | - |
L0Y30_RS17705 (L0Y30_17680) | 3972176..3972550 | - | 375 | WP_043881709.1 | protein YgfX | Toxin |
L0Y30_RS17710 (L0Y30_17685) | 3972570..3972836 | - | 267 | WP_012773340.1 | FAD assembly factor SdhE | Antitoxin |
L0Y30_RS17715 (L0Y30_17690) | 3973072..3974073 | + | 1002 | WP_256542329.1 | tRNA-modifying protein YgfZ | - |
L0Y30_RS17720 (L0Y30_17695) | 3974253..3974900 | - | 648 | WP_012773338.1 | hemolysin III family protein | - |
L0Y30_RS17725 (L0Y30_17700) | 3975313..3975921 | + | 609 | WP_181829659.1 | HD domain-containing protein | - |
L0Y30_RS17730 (L0Y30_17705) | 3975965..3976969 | + | 1005 | WP_256542330.1 | LacI family DNA-binding transcriptional regulator | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 14673.34 Da Isoelectric Point: 10.6585
>T231325 WP_043881709.1 NZ_CP090591:c3972550-3972176 [Pectobacterium aroidearum]
MQLLSLIVHGLLVLLILLAPWPDGYAWLWLCLVTMVMFGFIRSQRNIKSRQGEIVLLSETTLNWRQQEWQIVKRPWLLKN
GVLLSLQAVNGKDRQQLWLASDSMGDDEWRHLRQLLLQQKNWAR
MQLLSLIVHGLLVLLILLAPWPDGYAWLWLCLVTMVMFGFIRSQRNIKSRQGEIVLLSETTLNWRQQEWQIVKRPWLLKN
GVLLSLQAVNGKDRQQLWLASDSMGDDEWRHLRQLLLQQKNWAR
Download Length: 375 bp
>T231325 NZ_CP126333:39623-40039 [Citrobacter braakii]
ATGAAGAAAACCTGGATGCTCGACACCAACATCTGCTCGTTCATCATGCGCGAGCAGCCGGCAGCGGTGCTGAAGCGCCT
GGAGCAGGCGGTGCTGCGCGGTGATCGCATTGTGGTCTCGGCCGTGACGTATGCCGAGATGCGCTTCGGCGCCACCGGCC
CGAAGGCCTCGCCGCGCCATATTCAGCTGGTCGACGCGTTCTGCGCGCGCCTCGATGCCGTCCTGCCCTGGGACCGCGCC
GCGGTGGACGCCACGACGGACATCCGGGTGGCGCTGCGCCTAGCCGGGACGCCGATCGGCCCGAATGACACGGCCATTGC
CGGGCACGCCATCGCGGCGGGCGCCATCCTGGTGACGAACAATGTGAGAGAGTTTGCGCGGGTCCCGGGCCTGGTGCTGG
AAGACTGGGTGAAATAA
ATGAAGAAAACCTGGATGCTCGACACCAACATCTGCTCGTTCATCATGCGCGAGCAGCCGGCAGCGGTGCTGAAGCGCCT
GGAGCAGGCGGTGCTGCGCGGTGATCGCATTGTGGTCTCGGCCGTGACGTATGCCGAGATGCGCTTCGGCGCCACCGGCC
CGAAGGCCTCGCCGCGCCATATTCAGCTGGTCGACGCGTTCTGCGCGCGCCTCGATGCCGTCCTGCCCTGGGACCGCGCC
GCGGTGGACGCCACGACGGACATCCGGGTGGCGCTGCGCCTAGCCGGGACGCCGATCGGCCCGAATGACACGGCCATTGC
CGGGCACGCCATCGCGGCGGGCGCCATCCTGGTGACGAACAATGTGAGAGAGTTTGCGCGGGTCCCGGGCCTGGTGCTGG
AAGACTGGGTGAAATAA
Antitoxin
Download Length: 89 a.a. Molecular weight: 10465.94 Da Isoelectric Point: 6.2223
>AT231325 WP_012773340.1 NZ_CP090591:c3972836-3972570 [Pectobacterium aroidearum]
MEIDNKSRIHWACRRGMRELDIAIMPFFEHDYDTLSDSDKRTFVRLLQSDDPDLFNWLMNHGEPKDGELKRMISLIQTRN
KDRGPVAM
MEIDNKSRIHWACRRGMRELDIAIMPFFEHDYDTLSDSDKRTFVRLLQSDDPDLFNWLMNHGEPKDGELKRMISLIQTRN
KDRGPVAM
Download Length: 267 bp
>AT231325 NZ_CP126333:39396-39626 [Citrobacter braakii]
ATGCGCACAGTTTCGATATTTAAAAACGGCAATAACCGCGCCATCCGTCTGCCCCGGGACCTGGATTTTGATGGCGTCAG
CGAGCTGGAGATCGTCCGGGAAGGGGACAGCATCATTCTGCGTCCCGTCCGGCCGACCTGGGGCTCGTTCGCGCAGCTGG
ACAGGGCCGATCCGGACTTTATGGCGGAGCGTGAGGATGTGGTCAGCGATGAAGGACGCTTTGAGCCATGA
ATGCGCACAGTTTCGATATTTAAAAACGGCAATAACCGCGCCATCCGTCTGCCCCGGGACCTGGATTTTGATGGCGTCAG
CGAGCTGGAGATCGTCCGGGAAGGGGACAGCATCATTCTGCGTCCCGTCCGGCCGACCTGGGGCTCGTTCGCGCAGCTGG
ACAGGGCCGATCCGGACTTTATGGCGGAGCGTGAGGATGTGGTCAGCGATGAAGGACGCTTTGAGCCATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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