Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-HTH_XRE
Location 1004430..1005135 Replicon chromosome
Accession NC_011353
Organism Escherichia coli O157:H7 str. EC4115

Toxin (Protein)


Gene name relE Uniprot ID Q8X3N0
Locus tag ECH74115_RS05345 Protein ID WP_000539519.1
Coordinates 1004749..1005135 (-) Length 129 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag ECH74115_RS05340 Protein ID WP_001280945.1
Coordinates 1004430..1004759 (-) Length 110 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ECH74115_RS05325 999587..1000498 + 912 WP_001236044.1 glutathione ABC transporter permease GsiD -
ECH74115_RS05330 1000676..1003024 + 2349 WP_000950320.1 EAL domain-containing protein -
ECH74115_RS05335 1003032..1004360 + 1329 WP_000086905.1 GGDEF domain-containing protein -
ECH74115_RS05340 1004430..1004759 - 330 WP_001280945.1 DNA-binding transcriptional regulator Antitoxin
ECH74115_RS05345 1004749..1005135 - 387 WP_000539519.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ECH74115_RS05350 1005361..1006686 - 1326 WP_000049367.1 30S ribosomal protein S12 methylthiotransferase RimO -
ECH74115_RS05355 1006899..1007282 + 384 WP_000497137.1 biofilm formation regulator BssR -
ECH74115_RS05360 1007393..1008508 + 1116 WP_000554959.1 aldose sugar dehydrogenase YliI -
ECH74115_RS05365 1008505..1009131 - 627 WP_001295292.1 glutathione S-transferase GstB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-2

(1-124)

Antitoxin

Cro/C1-type helix-turn-helix domain

(53-94)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 14279.42 Da        Isoelectric Point: 9.9296

>T23132 WP_000539519.1 NC_011353:c1005135-1004749 [Escherichia coli O157:H7 str. EC4115]
MGVYKARRFSQSTKKLGIHDKVLMAAAEEVMQGIWEADLGSGVIKKRLPLQQGKSGGARTIIFFKSANHVFFYDGWSKSG
LSSKGSKEIEDDELAAYKKMANAFLAFSNKQIEDLIETGFLIEVKNER

Download         Length: 387 bp

>T23132 NC_011353:c1005135-1004749 [Escherichia coli O157:H7 str. EC4115]
ATGGGTGTGTATAAGGCAAGGCGATTCAGCCAAAGCACGAAAAAACTTGGTATTCACGATAAAGTTCTCATGGCTGCCGC
TGAAGAAGTGATGCAAGGCATATGGGAGGCTGATTTAGGTAGCGGTGTCATCAAAAAACGGTTACCCCTCCAACAAGGAA
AGAGTGGTGGAGCCAGAACAATTATCTTTTTTAAATCAGCAAATCATGTGTTTTTTTATGATGGTTGGTCCAAGAGTGGT
CTAAGCAGTAAAGGAAGCAAAGAAATCGAAGATGATGAACTGGCAGCCTACAAAAAAATGGCAAATGCATTTCTGGCCTT
TAGCAATAAGCAAATAGAGGATTTGATCGAAACTGGCTTCTTGATTGAGGTGAAAAATGAGCGATAA

Antitoxin


Download         Length: 110 a.a.        Molecular weight: 11982.08 Da        Isoelectric Point: 10.0101

>AT23132 WP_001280945.1 NC_011353:c1004759-1004430 [Escherichia coli O157:H7 str. EC4115]
MSDKLQMMLEDAKELNALGLMSDSEVDAIAVMVKAREVSARIAKVKSMTGEEIKAIRTRYGMSQSVLAHTMGMSKESVSK
WERNEIKPSGPALRILNTLAIKGPEVFAK

Download         Length: 330 bp

>AT23132 NC_011353:c1004759-1004430 [Escherichia coli O157:H7 str. EC4115]
ATGAGCGATAAATTACAAATGATGCTGGAAGATGCAAAGGAACTGAATGCACTGGGCCTGATGTCTGATAGTGAGGTTGA
TGCCATTGCCGTCATGGTCAAAGCCCGTGAAGTCAGCGCCCGTATAGCCAAAGTCAAATCAATGACGGGTGAAGAGATCA
AAGCCATCCGCACCCGATACGGCATGTCACAATCCGTGCTGGCACATACAATGGGAATGTCAAAAGAAAGTGTCTCGAAA
TGGGAACGTAATGAAATAAAACCGAGCGGCCCGGCACTACGTATTTTGAATACATTGGCAATAAAAGGGCCGGAAGTTTT
TGCAAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References